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• W2014023294 abstract "The control of bacterial transcription initiation depends on a primary σ factor for housekeeping functions, as well as alternative σ factors that control regulons in response to environmental stresses. The largest and most diverse subgroup of alternative σ factors, the group IV extracytoplasmic function σ factors, directs the transcription of genes that regulate a wide variety of responses, including envelope stress and pathogenesis. We determined the 2.3-Å resolution crystal structure of the −35 element recognition domain of a group IV σ factor, Escherichia coli σE4, bound to its consensus −35 element, GGAACTT. Despite similar function and secondary structure, the primary and group IV σ factors recognize their −35 elements using distinct mechanisms. Conserved sequence elements of the σE −35 element induce a DNA geometry characteristic of AA/TT-tract DNA, including a rigid, straight double-helical axis and a narrow minor groove. For this reason, the highly conserved AA in the middle of the GGAACTT motif is essential for −35 element recognition by σE4, despite the absence of direct protein–DNA interactions with these DNA bases. These principles of σE4/−35 element recognition can be applied to a wide range of other group IV σ factors." @default.
• W2014023294 created "2016-06-24" @default.
• W2014023294 creator A5031506654 @default.
• W2014023294 creator A5069772661 @default.
• W2014023294 date "2006-08-15" @default.
• W2014023294 modified "2023-10-14" @default.
• W2014023294 title "The Structural Basis for Promoter −35 Element Recognition by the Group IV σ Factors" @default.
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• W2014023294 doi "https://doi.org/10.1371/journal.pbio.0040269" @default.
• W2014023294 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/1540707" @default.
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• W2014023294 hasPublicationYear "2006" @default.
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