Matches in Ubergraph for { ?s <http://purl.obolibrary.org/obo/UBPROP_0000008> ?o ?g. }
- UBERON_0004825 UBPROP_0000008 "In the epidermis of embryonic birds, there remains a transient thickening that is comparable to the early formation of the dental lamina in the mouse" @default.
- UBERON_0004866 UBPROP_0000008 "The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods" @default.
- UBERON_0004868 UBPROP_0000008 "Two morphologic types of tapetum lucidum can be observed in the eyes of fish: one in the choroid that occurs in elasmobranchs, and the other which occurs in teleosts and lies in the pigment epithelium of the retina" @default.
- UBERON_0004882 UBPROP_0000008 "In hoofed animals, the eponychium is the deciduous hoof capsule in fetuses and newborn foals, and is a part of the permanent hoof in older animals" @default.
- UBERON_0004890 UBPROP_0000008 "In mouse this is sometimes divided into intermediate and diaphragmatic lobes" @default.
- UBERON_0004890 UBPROP_0000008 "in humans, the right lung typically has 3 lobes (superior, middle, inferior). The lobar fissures are often incomplete, making a connection between two apposed lobes. Conversely, more than the expected number of lobes may be produced by new fissures e.g. the azygous lobe of the lung. The additional lobes are termed 'accessory lobes' -- http://www.gpnotebook.co.uk/simplepage.cfm?ID=1120927803" @default.
- UBERON_0005052 UBPROP_0000008 "currently restricted to Aves, but may be found outside - e.g. Pangolins" @default.
- UBERON_0005056 UBPROP_0000008 "in eutherians, this is known as the vulva in and composed of the mons pubis, the labia majora and minora, the clitoris, the vestibule of the vagina and its glands, and the opening of the urethra and of the vagina [MP:0003126]" @default.
- UBERON_0005085 UBPROP_0000008 "With the exception of the adenohypophysis, homologues of the nonneurogenic placodes (e.g. placodes giving rise to the teeth, hair follicles and lens), appear to be lacking in invertebrate chordates." @default.
- UBERON_0005199 UBPROP_0000008 "mice have a single pair of cervical mammary glands" @default.
- UBERON_0005200 UBPROP_0000008 "Most primates have one pair of mammary glands, which are thoracic." @default.
- UBERON_0005251 UBPROP_0000008 "In mammals, the yolk sac cavity contains fluid rather than platelets" @default.
- UBERON_0005299 UBPROP_0000008 "FMA has FMA:27886 skin of prepuce of clitoris" @default.
- UBERON_0005302 UBPROP_0000008 "there is no true anatomical equivalent in humans" @default.
- UBERON_0005311 UBPROP_0000008 "in mouse, five pairs of symmetrically positioned mammary placodes (three thoracic and two inguinal) form at reproducible locations along the mammary line at E11.5; the individual pairs develop asynchronously and in a distinct order; pair 3 is first, followed by pair 4, then by pairs 1 and 5 (which develop together), and finally by pair 2; the orientation of placodal cells is not uniform, suggesting that placodes are formed by migration of cells from the mammary line; between E11.5 and E12.5, each mammary placode expands and invaginates into the underlying mesenchyme to form an early bulb-shaped mammary bud[MP]" @default.
- UBERON_0005347 UBPROP_0000008 "This is a structure present in rodents and is not present in humans. The cerebellum hemisphere structure and lobulation is dramatically different between these species." @default.
- UBERON_0005348 UBPROP_0000008 "MP says the ansiform lobule not present in humans; however, FMA seems to have this, as well as two subclasses, so for now we group based on synonymy from multiple sources" @default.
- UBERON_0005349 UBPROP_0000008 "MP says not present in humans; however, we group based on synonymy from multiple sources" @default.
- UBERON_0005350 UBPROP_0000008 "MP says not present in humans; however, we group based on synonymy from multiple sources" @default.
- UBERON_0005351 UBPROP_0000008 "large in mouse, insignificant in humans" @default.
- UBERON_0005353 UBPROP_0000008 "The perifollicular zone, which is present in human and not rodents, may be the functional equivalent of the marginal sinus in rodents." @default.
- UBERON_0005356 UBPROP_0000008 "median funnel-shaped invagination of ectoderm, the nasohypophyseal pouch. It will contribute to the formation of the pituitary gland of the adult lamprey and is homologous to Rathke's pouch and perhaps to Hatschek 's pit (amphioxus)." @default.
- UBERON_0005402 UBPROP_0000008 "vestigial in humans. In humans, the philtrum is formed where the nasomedial and maxillary processes meet during embryonic development (colloquially known as Hulse lines). When these processes fail to fuse fully in humans, a cleft lip (sometimes called a 'hare lip') can result. A flattened or smooth philtrum can be a symptom of fetal alcohol syndrome or Prader-Willi syndrome" @default.
- UBERON_0005408 UBPROP_0000008 "All vertebrates possess at least 4 circumventricular organs (including the hypothalamus) which can monitor the contents of the cerebrospinal fluid and secrete additional substances into it. (Butler, 1996, p. 330)" @default.
- UBERON_0005410 UBPROP_0000008 "In elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans). todo - check EMAPA" @default.
- UBERON_0005411 UBPROP_0000008 "In elasmobranchs, the otic capsule remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)" @default.
- UBERON_0005428 UBPROP_0000008 "In chicken fate mapping studies it was found to originate from neural crest residing between Somite 1-7 (S1-7); In mouse it is considered to be derived from rhombencephalic (post otic) neural crest cells and trunk neural crest cells (anterior to S5)" @default.
- UBERON_0005429 UBPROP_0000008 "Most humans have just one pancreatic duct. However, some have an additional accessory pancreatic duct also called the Duct of Santorini, which connects straight to the duodenum at the minor duodenal papilla. Both these ducts connect to the second part (the vertical one) of the duodenum. However, the Duct of Santorini, which bypasses the Ampulla of Vater, is non-functional whereas the Duct of Wirsung is functional and carries the digestive enzymes released by the pancreas. It is named for Giovanni Domenico Santorini" @default.
- UBERON_0005435 UBPROP_0000008 "In dogs, it is located to the left and often ventral to the aorta; in cats it is left and dorsal; in guinea pigs it runs to the left and drains into the left innominate vein" @default.
- UBERON_0005473 UBPROP_0000008 "Amphibians - 1 sacral vertebra; Living reptiles & most birds - 2 sacral vertebrae; Most mammals - 3 to 5 sacral vertebrae. TODO - split sacral from sacrococcygeal" @default.
- UBERON_0005493 UBPROP_0000008 "attachment sites may vary by species; for example, in orangutans, the posterior digastric does not attach to the hyoid, but we may still consider this a (supra)hyoid muscle." @default.
- UBERON_0005562 UBPROP_0000008 "variability of developmental origin: In fish, thymic primordia are generated by all the pouches except the first. However, in avians the thymus arises from pouches 3 and 4, whereas in humans it is only generated by the third pouch[PMID:16313389] The thymus arises from the second pouch in frogs, 2-6 in cartilaginous fish, 2-3 in reptiles, 3 or 4 in bony fish, birds and mammals. The final number is variable - 5 paired organs in sharks, 4 in caecilians, 3 in urodeles, 1 in many teleost, anurans and many mammals" @default.
- UBERON_0005564 UBPROP_0000008 "this is a very broad grouping class" @default.
- UBERON_0005594 UBPROP_0000008 "in humans this includes somites 1-4" @default.
- UBERON_0005613 UBPROP_0000008 "Contributes to the arch of aorta in humans" @default.
- UBERON_0005617 UBPROP_0000008 "In humans the inferior mesenteric vein empties into the splenic vein, the superior mesenteric vein joins the splenic vein to form the portal vein" @default.
- UBERON_0005622 UBPROP_0000008 "Normally regresses in humans" @default.
- UBERON_0005631 UBPROP_0000008 "stuctures homologous to the four extraembryonic membranes appear in mammals [ISBN:0073040584 (Vertebrates, Kardong)]" @default.
- UBERON_0005725 UBPROP_0000008 "In mammals, the main olfactory system detects odorants that are inhaled through the nose, where they contact the main olfactory epithelium, which contains various olfactory receptors. These olfactory receptors are membrane proteins of bipolar olfactory receptor neurons in the olfactory epithelium. Rather than binding specific ligands like most receptors, olfactory receptors display affinity for a range of odor molecules. Olfactory neurons transduce receptor activation into electrical signals in neurons. The signals travel along the olfactory nerve, which belongs to the peripheral nervous system. This nerve terminates in the olfactory bulb, which belongs to the central nervous system. The complex set of olfactory receptors on different olfactory neurons can distinguish a new odor from the background environmental odors and determine the concentration of the odor[WP]." @default.
- UBERON_0005819 UBPROP_0000008 "In humans develops by the 5th week of gestation" @default.
- UBERON_0005876 UBPROP_0000008 "All amniotes studied to date initiate external genital development with the formation of paired genital swellings. In mammals, archosaurs, and turtles, these swellings merge to form a single genital tubercle, the precursor of the penis and clitoris[PMID:24960313]" @default.
- UBERON_0005876 UBPROP_0000008 "GT development is indistinguishable in male and female mouse embryos until approximately E16, when the urethral plate begins to be masculinized to form the penile urethra, marking the beginning of an androgen-dependent phase of sexual differentiation[MP:0011771]" @default.
- UBERON_0005876 UBPROP_0000008 "todo - add taxon constraints" @default.
- UBERON_0005922 UBPROP_0000008 "In many carnivores and ungulates, the maxilloturbinal is the most complex element immediately posterior to the vestibule[PMID:25312359]" @default.
- UBERON_0005925 UBPROP_0000008 "In many carnivores and ungulates, the ethmoturbinals are most complex within a posterosuperior cul-de-sac, the olfactory recess[PMID:25312359]" @default.
- UBERON_0005928 UBPROP_0000008 "Fish have two pairs of external nostrils." @default.
- UBERON_0006015 UBPROP_0000008 "Normally in mammals, webbing is present in the embryo but resorbed later in development, but in various mammal species it occasionally persists in adulthood In humans, it can be found in those suffering from LEOPARD syndrome and from Aarskog-Scott syndrome. Webbing between the digits of the hindfoot is also present in several mammals that spend part of their time in the water" @default.
- UBERON_0006065 UBPROP_0000008 "In cyprinids, the hemal arch forms directly in membrane bone[ZFA]" @default.
- UBERON_0006065 UBPROP_0000008 "fish, most reptiles, some birds, and some mammals with long tails." @default.
- UBERON_0006071 UBPROP_0000008 "This region is reduced in humans and corresponds to the coccyx" @default.
- UBERON_0006075 UBPROP_0000008 "In adult humans, the sacral skeleton is fused and called the sacrum" @default.
- UBERON_0006102 UBPROP_0000008 "Brodmann found a cytoarchitecturally homologous area in the monkey (Cercopithecus), but it was so weakly developed that he omitted it from the cortical map of that species (Brodmann-1909)." @default.
- UBERON_0006135 UBPROP_0000008 "http://www1.pbrc.hawaii.edu/~danh/MyelinEvolution/evolution.html, http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=6134604, Wikipedia:Myelin#Invertebrate_myelin" @default.
- UBERON_0006197 UBPROP_0000008 "In humans this refers to either the anterior or posterior auricular vein, passing in front of or behind the ear. This class also groups other auricular veins, including the greater, ventral, central auricular nerves. These may exhibit different branching structures. In the pig, the external jugular branches to the maxillary to the caudal auricular to the middle auricular, then onto various unique patterns" @default.
- UBERON_0006272 UBPROP_0000008 "In humans, the oronasal membrane ruptures during the seventh week, producing a single, large oronasal cavity" @default.
- UBERON_0006332 UBPROP_0000008 "In Aves: The nasal capsule is dorsoventrally divided into two parts: the upper part, the ectethmoid, serves olfaction and is composed of the lamina cribosa, the crista galli apophysis and the conchae. The lower part, the mesethmoid, is a thick cartilage bar extending from the corpus sphenoidalis to the rostral extremity of the nose (Fig. 1A-B). In the avian embryo, the mesethmoid constitutes the cartilage primordium of the upper beak." @default.
- UBERON_0006332 UBPROP_0000008 "In avians, the mesethmoid supports upper beak formation, whereas the ectethmoid comprises elements of the olfactory system, including the lamina cribosa, the crista galli apophysis and the conchae." @default.
- UBERON_0006332 UBPROP_0000008 "In most mammals, the nasal capsule remains unossified, except in mammals where the ethmoid portion ossifies to form the turbinates" @default.
- UBERON_0006332 UBPROP_0000008 "by the process of folding of the cartilaginous nasal capsule during fetal development, outpouchings of the main nasal chamber become enlarged (primary pneumatization) (Witmer, 1999; Macrini, 2014). The resulting paranasal recesses may or may not expand farther into the bodies of facial and basicranial bones (secondary pneumatization). Histori- cally, the result of these processes, paranasal recesses and sinuses, respectively, have not always been distin- guished (see further discussion in Rossie, 2006). Yet, in either case the nasal fossa becomes subdivided into a central nasal chamber and more peripheral paranasal chambers (Smith et al., 2014; Curtis and Van Valken- burgh, 2014)[PMID:25312359]" @default.
- UBERON_0006378 UBPROP_0000008 "In harbor seals, the structure of the vibrissal shaft is undulated (wavy) and flattened. This specialization is also found in most true seals. In contrast, the whiskers of the California sea lion are circular or elliptical in cross-section and are smooth." @default.
- UBERON_0006435 UBPROP_0000008 "found in most mammals, with the exception of humans" @default.
- UBERON_0006518 UBPROP_0000008 "4 in mice, divided into 3 in human by two interlobal fissures" @default.
- UBERON_0006530 UBPROP_0000008 "This term covers a variety of species. Example: In D. melanogaster, seminal fluid proteins affect female receptivity, ovulation, oogenesis, sperm storage, sperm competition and mating plug formation" @default.
- UBERON_0006597 UBPROP_0000008 "In snakes, the quadrate bone has become elongated and very mobile, and contributes greatly to their ability to swallow very large prey items. In mammals the articular and quadrate bones have migrated to the middle ear and are known as the malleus and incus." @default.
- UBERON_0006599 UBPROP_0000008 "Unlike in frogs and axolotl, the hypochord does not appear to be endodermally derived[ZFA]" @default.
- UBERON_0006605 UBPROP_0000008 "posterior tectum synoticum in humans - a skull roof element of the chondrocranium - temporarily exists in the territory of the interparietal during fetal life, and may be resposible for the sutura mendosa" @default.
- UBERON_0006606 UBPROP_0000008 "in snakes, the mandibular symphysis is composed of soft tissues, allowing independent movement of each mandible" @default.
- UBERON_0006633 UBPROP_0000008 "In humans is situated on its superior border and serves for the attachment of various muscles" @default.
- UBERON_0006657 UBPROP_0000008 "The glenoid fossa can be associated with the metapterygium in sarcopterygians, or either the meso- or propterygium in basal gnathostomes such as Chondrichthyans" @default.
- UBERON_0006660 UBPROP_0000008 "typically smooth muscle, but there may be exceptions - in the upper esophagus, part of the externa is skeletal muscle, rather than smooth muscle." @default.
- UBERON_0006663 UBPROP_0000008 "The major anatomic variation between the pig and other mammalian species is the presence of the large left azygos vein, which enters the coronary sinus (Fig. 1). In other mammals, hemiazygos vein enters the pre- cava." @default.
- UBERON_0006683 UBPROP_0000008 "In humans it generally closes in 6-8 weeks from birth. A delay in closure is associated with congential hypothyroidism" @default.
- UBERON_0006720 UBPROP_0000008 "We use this class to group the medial and lateral pterygoids of mammals as well as the pterygoideus of amphibians and reptiles. Note that FEED includes a distinct class for the reptilian pterygoideus. In future, this branch of the ontology may be refined to include a more complete classification of jaw adductors across gnathostomes. See for example DOI:10.1134/S1062359010090050" @default.
- UBERON_0006721 UBPROP_0000008 "The alisphenoid in mammals is part cartilage bone, part membrane bone[PMC1231738] In many mammals, e.g. the dog, the greater wing of the sphenoid bone stays through life a separate bone called the alisphenoid[WP]." @default.
- UBERON_0006722 UBPROP_0000008 "Conical in shape, with the cone extending inwards (e.g. mammals) or outwards (e.g. in birds)" @default.
- UBERON_0006749 UBPROP_0000008 "Mammals typically have four parathyroids, while other groups typically have six" @default.
- UBERON_0006755 UBPROP_0000008 "Mammals typically have four parathyroids, while other groups typically have six" @default.
- UBERON_0006765 UBPROP_0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right." @default.
- UBERON_0006766 UBPROP_0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right." @default.
- UBERON_0006783 UBPROP_0000008 "The tectum in lampreys has more layers than the tectum in hagfishes, likely related to the fact that vision is less well developed in hagfishes. tectal lamination is almost identical in reptiles and birds and is more restricted in mammals[http://icb.oxfordjournals.org/content/42/4/743.full]" @default.
- UBERON_0006829 UBPROP_0000008 "The mouse has both left and right anterior vena cava. adult humans only have a right. Postnatally the left regresses and becomes non-functional (Wessels and Sedmera 2003)." @default.
- UBERON_0006849 UBPROP_0000008 "present in all tetrapods with even vestiges of anterior limbs, e.g., turtles & birds & mammals." @default.
- UBERON_0006860 UBPROP_0000008 "Found in Actinopterygii. Often lacking in bottom fishes" @default.
- UBERON_0006946 UBPROP_0000008 "There are two basic designs for efferent ductule structure: a) multiple entries into the epididymis, as seen in most large mammals. In humans and other large mammals, there are approximately 15-20 efferent ducts, which also occupy nearly one third of the head of the epididymis. b) single entry, as seen in most small animals such as rodents, whereby the 3-6 ductules merge into a single small ductule prior to entering the epididymis" @default.
- UBERON_0006947 UBPROP_0000008 "we use this as a generic grouping class for a number of taxa" @default.
- UBERON_0007097 UBPROP_0000008 "In mouse and chick, the derivative of the NSB (with a minor contribution from the CLE), the `chordo-neural-hinge'(CNH) (Cambray and Wilson, 2007; Catala et al., 1995; Charrier et al., 1999), contains progenitors for the ventral neural tube, somites and notochord (Cambray and Wilson, 2002; McGrew et al., 2008). The CNH is continuous with the most recently formed neural tube and notochord. By contrast, the tissue immediately caudal to the CNH exclusively produces somites in mouse and chick (McGrew et al., 2008)." @default.
- UBERON_0007100 UBPROP_0000008 "note we reserve the subclass 'heart' from the vertebrate multi-chambered heart. 'The first heart-like organ is believed to have appeared 500my ago in an ancestral bilaterian'. Amniotes: four-chambered heart. Amphibians: two atria, one ventricle, pulmonary; fish: single atrium and ventricle; amphioxus: tubular, non-striated, closed, unidirectional; ascidians: tubular, striated, open, bidirectional; arthropods: tubular, open; C elegans: contractile pharynx; Cnideria: striated muscle cells associated with gastrodermis" @default.
- UBERON_0007106 UBPROP_0000008 "The mouse and human placentas have labyrinthine and villous types of interdigitation between maternal and fetal tissues, respectively" @default.
- UBERON_0007120 UBPROP_0000008 "In humans, there are two premolars per quadrant, making eight premolars total in the mouth. They have at least two cusps. Premolars can be considered as a 'transitional tooth' during chewing, or mastication. It has properties of both the anterior canines and posterior molars, and so food can be transferred from the canines to the premolars and finally to the molars for grinding, instead of directly from the canines to the molars. The premolars in humans are the maxillary first premolar, maxillary second premolar, mandibular first premolar, and the mandibular second premolar. There is always one large buccal cusp, especially so in the mandibular first premolar. The lower second premolar almost always presents with two lingual cusps. Premolar teeth by definition are permanent teeth distal to the canines preceded by deciduous molars. In primitive mammals there are four premolars per quadrant. The most mesial two have been lost in Catarrhines. Paleontologists refer to human premolars as Pm3 and Pm4" @default.
- UBERON_0007123 UBPROP_0000008 "the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract." @default.
- UBERON_0007127 UBPROP_0000008 "in humans pouches 5 and 6 are hard to distinguish." @default.
- UBERON_0007194 UBPROP_0000008 "bipartite seminal vesicles, with a seminal gland and vesicular gland sharing a common duct are found in lagomorphs" @default.
- UBERON_0007324 UBPROP_0000008 "In mice many lobules lack islets, in contrast to other mammals including humans" @default.
- UBERON_0007350 UBPROP_0000008 "The arcopallium refers to regions of the avian brain which partially overlap regions homologous to the amygdala of mammals. These regions have formerly been referred to as archistriatum, and before this epistriatum or amygdaloid complex, and a recent change of nomenclature has divided the region into the arcopallium and posterior pallial amygdala. The new nomenclature, adopted in 2004, reflects a modern understanding that the avian brain is broadly similar to the mammalian brain, containing large regions homologous to the mammalian neocortex, claustrum, and pallial amygdala. The outdated nomenclature it replaced perceived the avian brain as consisting almost entirely of enlarged basal ganglia, to which more complex outer layers had been added during a progress toward mammalian intelligence. [Wikipedia:Arcopallium]" @default.
- UBERON_0007356 UBPROP_0000008 "Aves specific structure - consider adding functional grouping class. Kardong: some cetaceans have a crop-like structure" @default.
- UBERON_0007357 UBPROP_0000008 "consider extending to crocodilians. EMAPA has proventricular region" @default.
- UBERON_0007381 UBPROP_0000008 "Archosaurian (crocodilian and avian) scales and turtle scutes develop from local epithelial thickenings called placodes, though the scales of lizards and snakes (Lepidosauria) develop without placodes as skin folds (Maderson, '65; Sawyer, '72; Harris et al., 2002; Cherepanov, '89, 2006; Alibardi and Minelli, 2014; Moustakas- Verho et al., 2014; we do not consider crocodilian osteoderms, which have been called scutes by some workers, to be homologous to the skin appendages we discuss)[PMID:25877335]" @default.
- UBERON_0007383 UBPROP_0000008 "Originally this tissue is one cell layer thick but in most vertebrates it soon becomes a two layered structure. The outer layer gives rise to the periderm." @default.
- UBERON_0007592 UBPROP_0000008 "In humans, Ciliated columnar epithelial cells are found mainly in the tracheal and bronchial regions of the pulmonary system and also in the fallopian tubes of the female reproductive system" @default.
- UBERON_0007723 UBPROP_0000008 "in humans, this connects proximal and distal phalanges of the thumb, so there is only a single inter-phalangeal joint - i.e. there is no distinct proximal and distal joints" @default.