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- W1477998918 abstract "BioRuby [6] is the project to bulid useful library for bioinformatics tasks with the object oriented scripting language Ruby, started in late 2000. Ruby is made in Japan and is getting popularity by its simple and powerful syntax in recent years. For Perl, Java and Python programmers, there are already existing BioPerl [4], BioJava [3] and BioPython [5] projects as precedent efforts, and organized by the open bio foundation [7, 2, 1]. However, they tend to be complicated unnecessarily because of the limitation of each language characteristics and historical reasons that they have gradually developed. Taking these state into consideration, we find the ruby language is suitable for constructing simple and easy to use open bio library. In 2002, the first invited-only Open Bio* developers meeting called BioHackathon was held in Arizona and Cape Town, and we have agreed on five new ways to retrieve a record given an identifier from the biological sequence databases. These methods are named OBDA (open bio sequence database access) and include flatfile indexing (simple, Berkeley DB), BioFetch (CGI/HTTP), BioSQL (MySQL, PostgreSQL, Oracle), XEMBL and Corba described below." @default.
- W1477998918 created "2016-06-24" @default.
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- W1477998918 date "2002-01-01" @default.
- W1477998918 modified "2023-10-04" @default.
- W1477998918 title "BioRuby: Object Oriented Open Source Library for Bioinformatics" @default.
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- W1477998918 doi "https://doi.org/10.11234/gi1990.13.248" @default.
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