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• W1505806382 abstract "A critical goal of pharmacogenomics research is to identify genes that can explain variation in drug response. We have previously reported a method that creates a genome-scale ranking of genes likely to interact with a drug. The algorithm uses information about drug structure and indications of use to rank the genes. Although the algorithm has good performance, its performance depends on a curated set of drug-gene relationships that is expensive to create and difficult to maintain. In this work, we assess the utility of text mining in extracting a network of drug-gene relationships automatically. This provides a valuable aggregate source of knowledge, subsequently used as input into the algorithm that ranks potential pharmacogenes. Using a drug-gene network created from sentence-level co-occurrence in the full text of scientific articles, we compared the performance to that of a network created by manual curation of those articles. Under a wide range of conditions, we show that a knowledge base derived from text-mining the literature performs as well as, and sometimes better than, a high-quality, manually curated knowledge base. We conclude that we can use relationships mined automatically from the literature as a knowledgebase for pharmacogenomics relationships. Additionally, when relationships are missed by text mining, our system can accurately extrapolate new relationships with 77.4% precision." @default.
• W1505806382 created "2016-06-24" @default.
• W1505806382 creator A5007767486 @default.
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• W1505806382 date "2009-10-01" @default.
• W1505806382 modified "2023-10-17" @default.
• W1505806382 title "IMPROVING THE PREDICTION OF PHARMACOGENES USING TEXT-DERIVED DRUG-GENE RELATIONSHIPS" @default.
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• W1505806382 doi "https://doi.org/10.1142/9789814295291_0033" @default.
• W1505806382 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3092476" @default.
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• W1505806382 hasPublicationYear "2009" @default.
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