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• W1552684024 abstract "AbstractWe previously described a tic-tac-toe playing molecular auto- maton, MAYA-II, constructed from a molecular array of deoxyribozyme- based logic gates, that uses oligonucleotides as inputs and outputs. We are now developing an ensemble modeling tool for high-throughput oligonucleotide input and logic gate designs. The modeling tool is based on exhaustive reconstruction of both intended and unintended reactions between MAYA-II gates and inputs, and seeks to correlate empirical observations with computational predictions. We present results from computational analysis of the MAYA-II Yes logic gate and input interactions. Results indicate that in silico modeling correlates with experimental results, creating a predictive value and benchmark. These studies serve purpose towards our goal of constructing a generalized oligonucleotide library for expansion of molecular computation networks beyond hundreds, to millions of potential interactions, conferring greater functionality in terms of both reliability and complexity.KeywordsWest Nile VirusLogic GateMinimum Free EnergyChemical NetworkNucleic Acid StrandThese keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves." @default.
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• W1552684024 date "2009-01-01" @default.
• W1552684024 modified "2023-09-25" @default.
• W1552684024 title "Advancing the Deoxyribozyme-Based Logic Gate Design Process" @default.
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• W1552684024 doi "https://doi.org/10.1007/978-3-642-10604-0_5" @default.
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