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- W1563454002 abstract "RNA-dependent RNA polymerases (RdRPs) from the Flaviviridae family are representatives of viral polymerases that carry out RNA synthesis through a de novo initiation mechanism. They share a ≈ 600-residue polymerase core that displays a canonical viral RdRP architecture resembling an encircled right hand with palm, fingers, and thumb domains surrounding the active site. Polymerase catalytic motifs A-E in the palm and motifs F/G in the fingers are shared by all viral RdRPs with sequence and/or structural conservations regardless of the mechanism of initiation. Different from RdRPs carrying out primer-dependent initiation, Flaviviridae and other de novo RdRPs utilize a priming element often integrated in the thumb domain to facilitate primer-independent initiation. Upon the transition to the elongation phase, this priming element needs to undergo currently unresolved conformational rearrangements to accommodate the growth of the template-product RNA duplex. In the genera of Flavivirus and Pestivirus, the polymerase module in the C-terminal part of the RdRP protein may be regulated in cis by the N-terminal region of the same polypeptide. Either being a methyltransferase in Flavivirus or a functionally unclarified module in Pestivirus, this region could play auxiliary roles for the canonical folding and/or the catalysis of the polymerase, through defined intra-molecular interactions." @default.
- W1563454002 created "2016-06-24" @default.
- W1563454002 creator A5049012342 @default.
- W1563454002 creator A5062257507 @default.
- W1563454002 creator A5090972511 @default.
- W1563454002 date "2015-06-08" @default.
- W1563454002 modified "2023-10-01" @default.
- W1563454002 title "A Structural Overview of RNA-Dependent RNA Polymerases from the Flaviviridae Family" @default.
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- W1563454002 doi "https://doi.org/10.3390/ijms160612943" @default.
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