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• W1566777468 endingPage "e0122468" @default.
• W1566777468 startingPage "e0122468" @default.
• W1566777468 abstract "We study here the permeability of the hydrophobic O2 molecule through a model DPPC bilayer at 323K and 350K, and of the trace amine p-tyramine through PC bilayers at 310K. The tyramine results are compared to previous experimental work at 298K. Nonequilibrium work methods were used in conjunction to simultaneously obtain both the potential of mean force (PMF) and the position dependent transmembrane diffusion coefficient, D(z), from the simulations. These in turn were used to calculate the permeability coefficient, P, through the inhomogeneous solubility-diffusion model. The results for O2 are consistent with previous simulations, and agree with experimentally measured P values for PC bilayers. A temperature dependence in the permeability of O2 through DPPC was obtained, with P decreasing at higher temperatures. Two relevant species of p-tyramine were simulated, from which the PMF and D(z) were calculated. The charged species had a large energetic barrier to crossing the bilayer of ~ 21 kcal/mol, while the uncharged, deprotonated species had a much lower barrier of ~ 7 kcal/mol. The effective in silico permeability for p-tyramine was calculated by applying three approximations, all of which gave nearly identical results (presented here as a function of the pKa). As the permeability value calculated from simulation was highly dependent on the pKa of the amine group, a further pKa study was performed that also varied the fraction of the uncharged and zwitterionic p-tyramine species. Using the experimental P value together with the simulated results, we were able to label the phenolic group as responsible for the pKa1 and the amine for the pKa2, that together represent all of the experimentally measured pKa values for p-tyramine. This agrees with older experimental results, in contrast to more recent work that has suggested there is a strong ambiguity in the pKa values." @default.
• W1566777468 created "2016-06-24" @default.
• W1566777468 creator A5015490085 @default.
• W1566777468 creator A5029560846 @default.
• W1566777468 creator A5051703757 @default.
• W1566777468 creator A5066446570 @default.
• W1566777468 date "2015-06-18" @default.
• W1566777468 modified "2023-09-27" @default.
• W1566777468 title "A Permeability Study of O2 and the Trace Amine p-Tyramine through Model Phosphatidylcholine Bilayers" @default.
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• W1566777468 doi "https://doi.org/10.1371/journal.pone.0122468" @default.
• W1566777468 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4472697" @default.
• W1566777468 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/26086933" @default.
• W1566777468 hasPublicationYear "2015" @default.
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