FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W1684151570> ?p ?o ?g. }

• W1684151570 abstract "Metagenomic libraries consist of DNA fragments from diverse species, with varying genome size and abundance. High-throughput sequencing platforms produce large volumes of reads from these libraries which may be assembled into contigs, ideally resembling the original larger genomic sequences. The uneven species distribution, along with the stochasticity in sample processing and sequencing bias, impact the success of accurate sequence assembly. Several assemblers enable the processing of viral metagenomic data de novo, generally using Overlap Layout Consensus or de Bruijn graph approaches for contig assembly. The success of viral genomic reconstruction in these datasets is limited by the degree of fragmentation of each genome in the sample, which is dependent on the sequencing effort and the genome length. Depending on ecological, biological or procedural biases, some fragments have a higher prevalence, or coverage, in the assembly. However, assemblers must face challenges such as the formation of chimerical structures and intra-species variability. Diversity calculation relies on the classification of the sequences that comprise a metagenomic dataset. Whenever the corresponding genomic and taxonomic information is available, contigs matching the same species can be classified accordingly and the coverage of its genome can be calculated for that species. This may be used to compare populations by estimating abundance and assessing species distribution from this data. Nevertheless, the coverage does not take into account the degree of fragmentation, or else genome completeness, and is not necessarily representative of actual species distribution in the samples. Furthermore, undetermined sequences are abundant in viral metagenomic datasets, resulting in several independent contigs that cannot be assigned by homology or genomic information. These may only be classified as different Operational Taxonomic Units (OTUs), sometimes remaining inadvisably unrelated. Thus, calculations using contigs as different OTUs ultimately overestimate diversity when compared to diversity calculated from species coverage. ... Last time we submitted a long abstract (the limit was 1000 characters) but this time it wont allow it to be longer than 350. Has this changed and why? For now, we'll just include the complete abstract in the manuscript. Please help us figure this out." @default.
• W1684151570 created "2016-06-24" @default.
• W1684151570 creator A5004234488 @default.
• W1684151570 creator A5023971005 @default.
• W1684151570 creator A5033218210 @default.
• W1684151570 date "2015-09-17" @default.
• W1684151570 modified "2023-10-14" @default.
• W1684151570 title "Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations" @default.
• W1684151570 cites W1546448925 @default.
• W1684151570 cites W1832083778 @default.
• W1684151570 cites W1966912927 @default.
• W1684151570 cites W1976313814 @default.
• W1684151570 cites W1980914602 @default.
• W1684151570 cites W1981835811 @default.
• W1684151570 cites W1995320511 @default.
• W1684151570 cites W1997246534 @default.
• W1684151570 cites W2004594378 @default.
• W1684151570 cites W2010002522 @default.
• W1684151570 cites W2022825068 @default.
• W1684151570 cites W2029227365 @default.
• W1684151570 cites W2041457600 @default.
• W1684151570 cites W2065171017 @default.
• W1684151570 cites W2076184415 @default.
• W1684151570 cites W2097029864 @default.
• W1684151570 cites W2097146199 @default.
• W1684151570 cites W2100670078 @default.
• W1684151570 cites W2100896078 @default.
• W1684151570 cites W2107974372 @default.
• W1684151570 cites W2109848222 @default.
• W1684151570 cites W2113679889 @default.
• W1684151570 cites W2113915152 @default.
• W1684151570 cites W2114590755 @default.
• W1684151570 cites W2116570187 @default.
• W1684151570 cites W2120902911 @default.
• W1684151570 cites W2121180999 @default.
• W1684151570 cites W2125826054 @default.
• W1684151570 cites W2138432715 @default.
• W1684151570 cites W2148067809 @default.
• W1684151570 cites W2154077074 @default.
• W1684151570 cites W2160969485 @default.
• W1684151570 cites W2161251845 @default.
• W1684151570 cites W2161546116 @default.
• W1684151570 cites W2167939345 @default.
• W1684151570 cites W2170551349 @default.
• W1684151570 cites W2171571559 @default.
• W1684151570 cites W2328023807 @default.
• W1684151570 doi "https://doi.org/10.3389/fbioe.2015.00141" @default.
• W1684151570 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4585024" @default.
• W1684151570 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/26442255" @default.
• W1684151570 hasPublicationYear "2015" @default.
• W1684151570 type Work @default.
• W1684151570 sameAs 1684151570 @default.
• W1684151570 citedByCount "28" @default.
• W1684151570 countsByYear W16841515702016 @default.
• W1684151570 countsByYear W16841515702017 @default.
• W1684151570 countsByYear W16841515702018 @default.
• W1684151570 countsByYear W16841515702019 @default.
• W1684151570 countsByYear W16841515702020 @default.
• W1684151570 countsByYear W16841515702021 @default.
• W1684151570 countsByYear W16841515702022 @default.
• W1684151570 countsByYear W16841515702023 @default.
• W1684151570 crossrefType "journal-article" @default.
• W1684151570 hasAuthorship W1684151570A5004234488 @default.
• W1684151570 hasAuthorship W1684151570A5023971005 @default.
• W1684151570 hasAuthorship W1684151570A5033218210 @default.
• W1684151570 hasBestOaLocation W16841515701 @default.
• W1684151570 hasConcept C104317684 @default.
• W1684151570 hasConcept C132525143 @default.
• W1684151570 hasConcept C141231307 @default.
• W1684151570 hasConcept C150194340 @default.
• W1684151570 hasConcept C15151743 @default.
• W1684151570 hasConcept C162317418 @default.
• W1684151570 hasConcept C189206191 @default.
• W1684151570 hasConcept C18949551 @default.
• W1684151570 hasConcept C192953774 @default.
• W1684151570 hasConcept C20218877 @default.
• W1684151570 hasConcept C41008148 @default.
• W1684151570 hasConcept C44465124 @default.
• W1684151570 hasConcept C51679486 @default.
• W1684151570 hasConcept C54355233 @default.
• W1684151570 hasConcept C59582021 @default.
• W1684151570 hasConcept C70721500 @default.
• W1684151570 hasConcept C78458016 @default.
• W1684151570 hasConcept C80444323 @default.
• W1684151570 hasConcept C86803240 @default.
• W1684151570 hasConcept C90132467 @default.
• W1684151570 hasConceptScore W1684151570C104317684 @default.
• W1684151570 hasConceptScore W1684151570C132525143 @default.
• W1684151570 hasConceptScore W1684151570C141231307 @default.
• W1684151570 hasConceptScore W1684151570C150194340 @default.
• W1684151570 hasConceptScore W1684151570C15151743 @default.
• W1684151570 hasConceptScore W1684151570C162317418 @default.
• W1684151570 hasConceptScore W1684151570C189206191 @default.
• W1684151570 hasConceptScore W1684151570C18949551 @default.
• W1684151570 hasConceptScore W1684151570C192953774 @default.
• W1684151570 hasConceptScore W1684151570C20218877 @default.
• W1684151570 hasConceptScore W1684151570C41008148 @default.
• W1684151570 hasConceptScore W1684151570C44465124 @default.
• W1684151570 hasConceptScore W1684151570C51679486 @default.
• W1684151570 hasConceptScore W1684151570C54355233 @default.

• next