FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W1778778595> ?p ?o ?g. }

• W1778778595 abstract "Maximum likelihood and posterior probability mapping are useful visualization techniques that are used to ascertain the mosaic nature of prokaryotic genomes. However, posterior probabilities, especially when calculated for four-taxon cases, tend to overestimate the support for tree topologies. Furthermore, because of poor taxon sampling four-taxon analyses suffer from sensitivity to the long branch attraction artifact. Here we extend the probability mapping approach by improving taxon sampling of the analyzed datasets, and by using bootstrap support values, a more conservative tool to assess reliability.Quartets of orthologous proteins were complemented with homologs from selected reference genomes. The mapping of bootstrap support values from these extended datasets gives results similar to the original maximum likelihood and posterior probability mapping. The more conservative nature of the plotted support values allows to focus further analyses on those protein families that strongly disagree with the majority or plurality of genes present in the analyzed genomes.Posterior probability is a non-conservative measure for support, and posterior probability mapping only provides a quick estimation of phylogenetic information content of four genomes. This approach can be utilized as a pre-screen to select genes that might have been horizontally transferred. Better taxon sampling combined with subtree analyses prevents the inconsistencies associated with four-taxon analyses, but retains the power of visual representation. Nevertheless, a case-by-case inspection of individual multi-taxon phylogenies remains necessary to differentiate unrecognized paralogy and shared phylogenetic reconstruction artifacts from horizontal gene transfer events." @default.
• W1778778595 created "2016-06-24" @default.
• W1778778595 creator A5045259703 @default.
• W1778778595 creator A5089207085 @default.
• W1778778595 date "2003-09-15" @default.
• W1778778595 modified "2023-10-06" @default.
• W1778778595 title "An improved probability mapping approach to assess genome mosaicism" @default.
• W1778778595 cites W1966233419 @default.
• W1778778595 cites W1971273325 @default.
• W1778778595 cites W1996803884 @default.
• W1778778595 cites W2001721767 @default.
• W1778778595 cites W2034733986 @default.
• W1778778595 cites W2038397024 @default.
• W1778778595 cites W2050012267 @default.
• W1778778595 cites W2076740557 @default.
• W1778778595 cites W2077681390 @default.
• W1778778595 cites W2090438401 @default.
• W1778778595 cites W2096118116 @default.
• W1778778595 cites W2102736136 @default.
• W1778778595 cites W2106882534 @default.
• W1778778595 cites W2119033868 @default.
• W1778778595 cites W2121166240 @default.
• W1778778595 cites W2121207530 @default.
• W1778778595 cites W2121332019 @default.
• W1778778595 cites W2127042732 @default.
• W1778778595 cites W2130044459 @default.
• W1778778595 cites W2140689424 @default.
• W1778778595 cites W2141497252 @default.
• W1778778595 cites W2146735768 @default.
• W1778778595 cites W2149298509 @default.
• W1778778595 cites W2154284350 @default.
• W1778778595 cites W2158714788 @default.
• W1778778595 cites W2161444534 @default.
• W1778778595 cites W2162421185 @default.
• W1778778595 cites W2170996473 @default.
• W1778778595 cites W2259542615 @default.
• W1778778595 cites W319819633 @default.
• W1778778595 cites W4247332402 @default.
• W1778778595 doi "https://doi.org/10.1186/1471-2164-4-37" @default.
• W1778778595 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/222983" @default.
• W1778778595 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/12974984" @default.
• W1778778595 hasPublicationYear "2003" @default.
• W1778778595 type Work @default.
• W1778778595 sameAs 1778778595 @default.
• W1778778595 citedByCount "22" @default.
• W1778778595 countsByYear W17787785952012 @default.
• W1778778595 countsByYear W17787785952013 @default.
• W1778778595 crossrefType "journal-article" @default.
• W1778778595 hasAuthorship W1778778595A5045259703 @default.
• W1778778595 hasAuthorship W1778778595A5089207085 @default.
• W1778778595 hasBestOaLocation W17787785951 @default.
• W1778778595 hasConcept C104317684 @default.
• W1778778595 hasConcept C106131492 @default.
• W1778778595 hasConcept C107673813 @default.
• W1778778595 hasConcept C113174947 @default.
• W1778778595 hasConcept C124101348 @default.
• W1778778595 hasConcept C134306372 @default.
• W1778778595 hasConcept C140779682 @default.
• W1778778595 hasConcept C141231307 @default.
• W1778778595 hasConcept C154945302 @default.
• W1778778595 hasConcept C17744445 @default.
• W1778778595 hasConcept C18903297 @default.
• W1778778595 hasConcept C193252679 @default.
• W1778778595 hasConcept C199539241 @default.
• W1778778595 hasConcept C2776359362 @default.
• W1778778595 hasConcept C31972630 @default.
• W1778778595 hasConcept C33923547 @default.
• W1778778595 hasConcept C36464697 @default.
• W1778778595 hasConcept C41008148 @default.
• W1778778595 hasConcept C54355233 @default.
• W1778778595 hasConcept C57830394 @default.
• W1778778595 hasConcept C70721500 @default.
• W1778778595 hasConcept C71640776 @default.
• W1778778595 hasConcept C78458016 @default.
• W1778778595 hasConcept C86803240 @default.
• W1778778595 hasConcept C94625758 @default.
• W1778778595 hasConceptScore W1778778595C104317684 @default.
• W1778778595 hasConceptScore W1778778595C106131492 @default.
• W1778778595 hasConceptScore W1778778595C107673813 @default.
• W1778778595 hasConceptScore W1778778595C113174947 @default.
• W1778778595 hasConceptScore W1778778595C124101348 @default.
• W1778778595 hasConceptScore W1778778595C134306372 @default.
• W1778778595 hasConceptScore W1778778595C140779682 @default.
• W1778778595 hasConceptScore W1778778595C141231307 @default.
• W1778778595 hasConceptScore W1778778595C154945302 @default.
• W1778778595 hasConceptScore W1778778595C17744445 @default.
• W1778778595 hasConceptScore W1778778595C18903297 @default.
• W1778778595 hasConceptScore W1778778595C193252679 @default.
• W1778778595 hasConceptScore W1778778595C199539241 @default.
• W1778778595 hasConceptScore W1778778595C2776359362 @default.
• W1778778595 hasConceptScore W1778778595C31972630 @default.
• W1778778595 hasConceptScore W1778778595C33923547 @default.
• W1778778595 hasConceptScore W1778778595C36464697 @default.
• W1778778595 hasConceptScore W1778778595C41008148 @default.
• W1778778595 hasConceptScore W1778778595C54355233 @default.
• W1778778595 hasConceptScore W1778778595C57830394 @default.
• W1778778595 hasConceptScore W1778778595C70721500 @default.
• W1778778595 hasConceptScore W1778778595C71640776 @default.
• W1778778595 hasConceptScore W1778778595C78458016 @default.
• W1778778595 hasConceptScore W1778778595C86803240 @default.

• next