FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W1834564252> ?p ?o ?g. }

• W1834564252 endingPage "1215" @default.
• W1834564252 startingPage "1198" @default.
• W1834564252 abstract "Peronospora tabacina is an obligate biotrophic oomycete that causes blue mold or downy mildew on tobacco (Nicotiana tabacum). It is an economically important disease occurring frequently in tobacco-growing regions worldwide. We sequenced and characterized the genomes of two P. tabacina isolates and mined them for pathogenicity-related proteins and effector-encoding genes. De novo assembly of the genomes using Illumina reads resulted in 4,016 (63.1 Mb, N 50 = 79 kb) and 3,245 (55.3 Mb, N 50 = 61 kb) scaffolds for isolates 968-J2 and 968-S26, respectively, with an estimated genome size of 68 Mb. The mitochondrial genome has a similar size (approximately 43 kb) and structure to those of other oomycetes, plus several minor unique features. Repetitive elements, primarily retrotransposons, make up approximately 24% of the nuclear genome. Approximately 18,000 protein-coding gene models were predicted. Mining the secretome revealed approximately 120 candidate RxLR, six CRN (candidate effectors that elicit crinkling and necrosis), and 61 WY domain–containing proteins. Candidate RxLR effectors were shown to be predominantly undergoing diversifying selection, with approximately 57% located in variable gene-sparse regions of the genome. Aligning the P. tabacina genome to Hyaloperonospora arabidopsidis and Phytophthora spp. revealed a high level of synteny. Blocks of synteny show gene inversions and instances of expansion in intergenic regions. Extensive rearrangements of the gene-rich genomic regions do not appear to have occurred during the evolution of these highly variable pathogens. These assemblies provide the basis for studies of virulence in this and other downy mildew pathogens." @default.
• W1834564252 created "2016-06-24" @default.
• W1834564252 creator A5011133919 @default.
• W1834564252 creator A5017632047 @default.
• W1834564252 creator A5021450352 @default.
• W1834564252 creator A5023069438 @default.
• W1834564252 creator A5030161839 @default.
• W1834564252 creator A5091321265 @default.
• W1834564252 creator A5091781749 @default.
• W1834564252 date "2015-11-01" @default.
• W1834564252 modified "2023-10-14" @default.
• W1834564252 title "Genome Sequence and Architecture of the Tobacco Downy Mildew Pathogen <i>Peronospora tabacina</i>" @default.
• W1834564252 cites W1484347389 @default.
• W1834564252 cites W1519542770 @default.
• W1834564252 cites W1842639876 @default.
• W1834564252 cites W1961518103 @default.
• W1834564252 cites W1968050313 @default.
• W1834564252 cites W1968838354 @default.
• W1834564252 cites W1969966687 @default.
• W1834564252 cites W1972895163 @default.
• W1834564252 cites W1980521280 @default.
• W1834564252 cites W1983690863 @default.
• W1834564252 cites W1984395210 @default.
• W1834564252 cites W1987735359 @default.
• W1834564252 cites W1996897094 @default.
• W1834564252 cites W1998923159 @default.
• W1834564252 cites W2000564475 @default.
• W1834564252 cites W2003553251 @default.
• W1834564252 cites W2006021810 @default.
• W1834564252 cites W2010421833 @default.
• W1834564252 cites W2014329664 @default.
• W1834564252 cites W2016446798 @default.
• W1834564252 cites W2020117372 @default.
• W1834564252 cites W2026936889 @default.
• W1834564252 cites W2029484381 @default.
• W1834564252 cites W2032044760 @default.
• W1834564252 cites W2037993016 @default.
• W1834564252 cites W2038535911 @default.
• W1834564252 cites W2045843097 @default.
• W1834564252 cites W2046183549 @default.
• W1834564252 cites W2047242127 @default.
• W1834564252 cites W2054254276 @default.
• W1834564252 cites W2058044724 @default.
• W1834564252 cites W2059864757 @default.
• W1834564252 cites W2066320476 @default.
• W1834564252 cites W2067327084 @default.
• W1834564252 cites W2068499843 @default.
• W1834564252 cites W2072852252 @default.
• W1834564252 cites W2078357950 @default.
• W1834564252 cites W2081417210 @default.
• W1834564252 cites W2082779396 @default.
• W1834564252 cites W2086433285 @default.
• W1834564252 cites W2089762842 @default.
• W1834564252 cites W2091593353 @default.
• W1834564252 cites W2091990822 @default.
• W1834564252 cites W2092287846 @default.
• W1834564252 cites W2094201044 @default.
• W1834564252 cites W2101000074 @default.
• W1834564252 cites W2101291993 @default.
• W1834564252 cites W2101786683 @default.
• W1834564252 cites W2106848799 @default.
• W1834564252 cites W2107013677 @default.
• W1834564252 cites W2108234281 @default.
• W1834564252 cites W2109088569 @default.
• W1834564252 cites W2110335151 @default.
• W1834564252 cites W2112814753 @default.
• W1834564252 cites W2118970397 @default.
• W1834564252 cites W2120867442 @default.
• W1834564252 cites W2123810848 @default.
• W1834564252 cites W2127322768 @default.
• W1834564252 cites W2128704637 @default.
• W1834564252 cites W2129744420 @default.
• W1834564252 cites W2131005949 @default.
• W1834564252 cites W2131496416 @default.
• W1834564252 cites W2132671821 @default.
• W1834564252 cites W2133117773 @default.
• W1834564252 cites W2136826997 @default.
• W1834564252 cites W2138122982 @default.
• W1834564252 cites W2142749416 @default.
• W1834564252 cites W2144537559 @default.
• W1834564252 cites W2145094784 @default.
• W1834564252 cites W2146384771 @default.
• W1834564252 cites W2147526198 @default.
• W1834564252 cites W2148609569 @default.
• W1834564252 cites W2148757951 @default.
• W1834564252 cites W2148817795 @default.
• W1834564252 cites W2149429041 @default.
• W1834564252 cites W2149801823 @default.
• W1834564252 cites W2151831732 @default.
• W1834564252 cites W2158804744 @default.
• W1834564252 cites W2160028045 @default.
• W1834564252 cites W2160506991 @default.
• W1834564252 cites W2160619010 @default.
• W1834564252 cites W2161961069 @default.
• W1834564252 cites W2164154943 @default.
• W1834564252 cites W2168292723 @default.
• W1834564252 cites W2169859562 @default.
• W1834564252 cites W2170854925 @default.

• next