FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W1850429294> ?p ?o ?g. }

• W1850429294 endingPage "972" @default.
• W1850429294 startingPage "958" @default.
• W1850429294 abstract "Summary In this paper, we present GSWABE, a graphics processing unit (GPU)‐accelerated pairwise sequence alignment algorithm for a collection of short DNA sequences. This algorithm supports all‐to‐all pairwise global, semi‐global and local alignment, and retrieves optimal alignments on Compute Unified Device Architecture (CUDA)‐enabled GPUs. All of the three alignment types are based on dynamic programming and share almost the same computational pattern. Thus, we have investigated a general tile‐based approach to facilitating fast alignment by deeply exploring the powerful compute capability of CUDA‐enabled GPUs. The performance of GSWABE has been evaluated on a Kepler‐based Tesla K40 GPU using a variety of short DNA sequence datasets. The results show that our algorithm can yield a performance of up to 59.1 billions cell updates per second (GCUPS), 58.5 GCUPS and 50.3 GCUPS for global, semi‐global and local alignment, respectively. Furthermore, on the same system GSWABE runs up to 156.0 times faster than the Streaming SIMD Extensions (SSE)‐based SSW library and up to 102.4 times faster than the CUDA‐based MSA‐CUDA (the first stage) in terms of local alignment. Compared with the CUDA‐based gpu‐pairAlign, GSWABE demonstrates stable and consistent speedups with a maximum speedup of 11.2, 10.7, and 10.6 for global, semi‐global, and local alignment, respectively. Copyright © 2014 John Wiley & Sons, Ltd." @default.
• W1850429294 created "2016-06-24" @default.
• W1850429294 creator A5009074414 @default.
• W1850429294 creator A5020388832 @default.
• W1850429294 date "2014-09-09" @default.
• W1850429294 modified "2023-10-16" @default.
• W1850429294 title "GSWABE: faster GPU‐accelerated sequence alignment with optimal alignment retrieval for short DNA sequences" @default.
• W1850429294 cites W14085413 @default.
• W1850429294 cites W1982088757 @default.
• W1850429294 cites W1986228396 @default.
• W1850429294 cites W2015292449 @default.
• W1850429294 cites W2037275405 @default.
• W1850429294 cites W2055043387 @default.
• W1850429294 cites W2068448872 @default.
• W1850429294 cites W2074231493 @default.
• W1850429294 cites W2075871133 @default.
• W1850429294 cites W2087064593 @default.
• W1850429294 cites W2094122934 @default.
• W1850429294 cites W2098232690 @default.
• W1850429294 cites W2106882534 @default.
• W1850429294 cites W2107824361 @default.
• W1850429294 cites W2108234281 @default.
• W1850429294 cites W2108718991 @default.
• W1850429294 cites W2109710144 @default.
• W1850429294 cites W2116508956 @default.
• W1850429294 cites W2117683095 @default.
• W1850429294 cites W2118874283 @default.
• W1850429294 cites W2120866529 @default.
• W1850429294 cites W2122942724 @default.
• W1850429294 cites W2128524432 @default.
• W1850429294 cites W2132967231 @default.
• W1850429294 cites W2142667471 @default.
• W1850429294 cites W2143210482 @default.
• W1850429294 cites W2144316495 @default.
• W1850429294 cites W2146379626 @default.
• W1850429294 cites W2162315106 @default.
• W1850429294 cites W2165949232 @default.
• W1850429294 cites W2170551349 @default.
• W1850429294 cites W2172031170 @default.
• W1850429294 cites W2489967872 @default.
• W1850429294 cites W3105244973 @default.
• W1850429294 doi "https://doi.org/10.1002/cpe.3371" @default.
• W1850429294 hasPublicationYear "2014" @default.
• W1850429294 type Work @default.
• W1850429294 sameAs 1850429294 @default.
• W1850429294 citedByCount "27" @default.
• W1850429294 countsByYear W18504292942014 @default.
• W1850429294 countsByYear W18504292942015 @default.
• W1850429294 countsByYear W18504292942016 @default.
• W1850429294 countsByYear W18504292942017 @default.
• W1850429294 countsByYear W18504292942018 @default.
• W1850429294 countsByYear W18504292942019 @default.
• W1850429294 countsByYear W18504292942020 @default.
• W1850429294 countsByYear W18504292942021 @default.
• W1850429294 countsByYear W18504292942022 @default.
• W1850429294 countsByYear W18504292942023 @default.
• W1850429294 crossrefType "journal-article" @default.
• W1850429294 hasAuthorship W1850429294A5009074414 @default.
• W1850429294 hasAuthorship W1850429294A5020388832 @default.
• W1850429294 hasConcept C104317684 @default.
• W1850429294 hasConcept C11413529 @default.
• W1850429294 hasConcept C121684516 @default.
• W1850429294 hasConcept C150552126 @default.
• W1850429294 hasConcept C154945302 @default.
• W1850429294 hasConcept C167625842 @default.
• W1850429294 hasConcept C173608175 @default.
• W1850429294 hasConcept C184898388 @default.
• W1850429294 hasConcept C185592680 @default.
• W1850429294 hasConcept C21442007 @default.
• W1850429294 hasConcept C2778112365 @default.
• W1850429294 hasConcept C2778119891 @default.
• W1850429294 hasConcept C2779851693 @default.
• W1850429294 hasConcept C2781335571 @default.
• W1850429294 hasConcept C37404715 @default.
• W1850429294 hasConcept C41008148 @default.
• W1850429294 hasConcept C45484198 @default.
• W1850429294 hasConcept C459310 @default.
• W1850429294 hasConcept C50630238 @default.
• W1850429294 hasConcept C54355233 @default.
• W1850429294 hasConcept C55493867 @default.
• W1850429294 hasConcept C68339613 @default.
• W1850429294 hasConcept C72802188 @default.
• W1850429294 hasConcept C86803240 @default.
• W1850429294 hasConcept C88031987 @default.
• W1850429294 hasConceptScore W1850429294C104317684 @default.
• W1850429294 hasConceptScore W1850429294C11413529 @default.
• W1850429294 hasConceptScore W1850429294C121684516 @default.
• W1850429294 hasConceptScore W1850429294C150552126 @default.
• W1850429294 hasConceptScore W1850429294C154945302 @default.
• W1850429294 hasConceptScore W1850429294C167625842 @default.
• W1850429294 hasConceptScore W1850429294C173608175 @default.
• W1850429294 hasConceptScore W1850429294C184898388 @default.
• W1850429294 hasConceptScore W1850429294C185592680 @default.
• W1850429294 hasConceptScore W1850429294C21442007 @default.
• W1850429294 hasConceptScore W1850429294C2778112365 @default.
• W1850429294 hasConceptScore W1850429294C2778119891 @default.
• W1850429294 hasConceptScore W1850429294C2779851693 @default.
• W1850429294 hasConceptScore W1850429294C2781335571 @default.

• next