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- W1854339933 abstract "AbstractWe describe and empirically evaluate machine learning methods for the prediction of zinc binding sites from protein sequences. We start by observing that a data set consisting of single residues as examples is affected by autocorrelation and we propose an ad-hoc remedy in which sequentially close pairs of candidate residues are classified as being jointly involved in the coordination of a zinc ion. We develop a kernel for this particular type of data that can handle variable length gaps between candidate coordinating residues. Our empirical evaluation on a data set of non redundant protein chains shows that explicit modeling the correlation between residues close in sequence allows us to gain a significant improvement in the prediction performance.KeywordsSupport Vector MachineProtein Data BankSite TypeBonding StateMetal Binding SiteThese keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves." @default.
- W1854339933 created "2016-06-24" @default.
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- W1854339933 date "2006-01-01" @default.
- W1854339933 modified "2023-10-16" @default.
- W1854339933 title "Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence" @default.
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- W1854339933 doi "https://doi.org/10.1007/11732990_26" @default.
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