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- W190527922 abstract "Polymorphisms in DNA- or RNA-seq data lead to recognisable patterns in a de Bruijn graph representation of the reads obtained by sequencing. Such patterns have been called mouths, or bubbles in the literature. They correspond to two vertex-disjoint directed paths between a source s and a target t. Due to the high number of such bubbles that may be present in real data, their enumeration is a major issue concerning the efficiency of dedicated algorithms. We propose in this paper the first linear delay algorithm to enumerate all bubbles with a given source." @default.
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- W190527922 date "2012-01-01" @default.
- W190527922 modified "2023-10-12" @default.
- W190527922 title "Efficient Bubble Enumeration in Directed Graphs" @default.
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- W190527922 doi "https://doi.org/10.1007/978-3-642-34109-0_13" @default.
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