Matches in SemOpenAlex for { <https://semopenalex.org/work/W1938526208> ?p ?o ?g. }
Showing items 1 to 99 of
99
with 100 items per page.
- W1938526208 endingPage "394" @default.
- W1938526208 startingPage "388" @default.
- W1938526208 abstract "Genotype imputation facilitates the identification of missing genotypes on a high-density array using low-density arrays and has great potential for reducing genotyping costs for cattle populations. However, the imputation quality varies across breeds, which have different effective population sizes. Therefore, the accuracy of genotype imputation must be evaluated in each breed. The Japanese Black cattle population has a unique genetic background, and this study aimed to investigate different factors affecting imputation quality in this population. A total of 1368 animals were genotyped using the Illumina BovineHD BeadChip, and the accuracy of imputation was evaluated using information from four lower density arrays. The extent of linkage disequilibrium for this population was relatively higher than that in other beef breeds but lower than that in dairy breeds. The accuracy of arrays with more than 20 000 single nucleotide polymorphisms (SNPs) was similar to or higher than that of lower density arrays. In addition, the minor allele frequency of SNPs in the reference population affected the accuracy. The accuracy increased as the size of the reference population increased, up to 400 animals, beyond which there was little increase. A higher genetic relationship between the reference and test populations increased imputation accuracy. These results indicate that high imputation accuracy can be achieved using high-density arrays, having enough reference animals and including relatives in the reference population." @default.
- W1938526208 created "2016-06-24" @default.
- W1938526208 creator A5001463729 @default.
- W1938526208 creator A5016795795 @default.
- W1938526208 creator A5039509783 @default.
- W1938526208 creator A5083628154 @default.
- W1938526208 date "2015-07-07" @default.
- W1938526208 modified "2023-10-18" @default.
- W1938526208 title "Accuracy of high-density genotype imputation in Japanese Black cattle" @default.
- W1938526208 cites W1587035534 @default.
- W1938526208 cites W2033151532 @default.
- W1938526208 cites W2077763475 @default.
- W1938526208 cites W2090447057 @default.
- W1938526208 cites W2096498051 @default.
- W1938526208 cites W2098066250 @default.
- W1938526208 cites W2104703917 @default.
- W1938526208 cites W2119030084 @default.
- W1938526208 cites W2139284959 @default.
- W1938526208 cites W2144998439 @default.
- W1938526208 cites W2146367124 @default.
- W1938526208 cites W2148965938 @default.
- W1938526208 cites W2160819071 @default.
- W1938526208 cites W2161633633 @default.
- W1938526208 cites W2163958121 @default.
- W1938526208 cites W2292324326 @default.
- W1938526208 doi "https://doi.org/10.1111/age.12314" @default.
- W1938526208 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/26156250" @default.
- W1938526208 hasPublicationYear "2015" @default.
- W1938526208 type Work @default.
- W1938526208 sameAs 1938526208 @default.
- W1938526208 citedByCount "16" @default.
- W1938526208 countsByYear W19385262082015 @default.
- W1938526208 countsByYear W19385262082016 @default.
- W1938526208 countsByYear W19385262082017 @default.
- W1938526208 countsByYear W19385262082018 @default.
- W1938526208 countsByYear W19385262082019 @default.
- W1938526208 countsByYear W19385262082020 @default.
- W1938526208 countsByYear W19385262082021 @default.
- W1938526208 countsByYear W19385262082022 @default.
- W1938526208 countsByYear W19385262082023 @default.
- W1938526208 crossrefType "journal-article" @default.
- W1938526208 hasAuthorship W1938526208A5001463729 @default.
- W1938526208 hasAuthorship W1938526208A5016795795 @default.
- W1938526208 hasAuthorship W1938526208A5039509783 @default.
- W1938526208 hasAuthorship W1938526208A5083628154 @default.
- W1938526208 hasConcept C104317684 @default.
- W1938526208 hasConcept C105795698 @default.
- W1938526208 hasConcept C135763542 @default.
- W1938526208 hasConcept C144024400 @default.
- W1938526208 hasConcept C149923435 @default.
- W1938526208 hasConcept C153209595 @default.
- W1938526208 hasConcept C157410074 @default.
- W1938526208 hasConcept C2776482104 @default.
- W1938526208 hasConcept C2908647359 @default.
- W1938526208 hasConcept C31467283 @default.
- W1938526208 hasConcept C33923547 @default.
- W1938526208 hasConcept C35605836 @default.
- W1938526208 hasConcept C54355233 @default.
- W1938526208 hasConcept C58041806 @default.
- W1938526208 hasConcept C86803240 @default.
- W1938526208 hasConcept C9357733 @default.
- W1938526208 hasConceptScore W1938526208C104317684 @default.
- W1938526208 hasConceptScore W1938526208C105795698 @default.
- W1938526208 hasConceptScore W1938526208C135763542 @default.
- W1938526208 hasConceptScore W1938526208C144024400 @default.
- W1938526208 hasConceptScore W1938526208C149923435 @default.
- W1938526208 hasConceptScore W1938526208C153209595 @default.
- W1938526208 hasConceptScore W1938526208C157410074 @default.
- W1938526208 hasConceptScore W1938526208C2776482104 @default.
- W1938526208 hasConceptScore W1938526208C2908647359 @default.
- W1938526208 hasConceptScore W1938526208C31467283 @default.
- W1938526208 hasConceptScore W1938526208C33923547 @default.
- W1938526208 hasConceptScore W1938526208C35605836 @default.
- W1938526208 hasConceptScore W1938526208C54355233 @default.
- W1938526208 hasConceptScore W1938526208C58041806 @default.
- W1938526208 hasConceptScore W1938526208C86803240 @default.
- W1938526208 hasConceptScore W1938526208C9357733 @default.
- W1938526208 hasIssue "4" @default.
- W1938526208 hasLocation W19385262081 @default.
- W1938526208 hasLocation W19385262082 @default.
- W1938526208 hasOpenAccess W1938526208 @default.
- W1938526208 hasPrimaryLocation W19385262081 @default.
- W1938526208 hasRelatedWork W1663907732 @default.
- W1938526208 hasRelatedWork W1986957655 @default.
- W1938526208 hasRelatedWork W2023340665 @default.
- W1938526208 hasRelatedWork W2040369616 @default.
- W1938526208 hasRelatedWork W2069461486 @default.
- W1938526208 hasRelatedWork W2077708857 @default.
- W1938526208 hasRelatedWork W2112869109 @default.
- W1938526208 hasRelatedWork W2144998439 @default.
- W1938526208 hasRelatedWork W2352957519 @default.
- W1938526208 hasRelatedWork W4296620168 @default.
- W1938526208 hasVolume "46" @default.
- W1938526208 isParatext "false" @default.
- W1938526208 isRetracted "false" @default.
- W1938526208 magId "1938526208" @default.
- W1938526208 workType "article" @default.