FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W1939619511> ?p ?o ?g. }

• W1939619511 endingPage "250" @default.
• W1939619511 startingPage "238" @default.
• W1939619511 abstract "The objectives of this study were to clarify the relationship between LMW-GS Glu-D3 gene of Ae. tauschii registered in GenBank and the six Glu-D3 genes including 12 allelic variants of common wheat characterized in our previous studies, and identify novel Glu-D3 genes and haplotypes from Ae. tauschii using gene specific PCR amplification. By searching the NCBI database, 13 LMW-GS genes/pseudogenes of Ae. tauschii were retrieved and classified into five gene families based on their nucleotide similarity with the six Glu-D3 genes of common wheat. Of them, four Ae. tauschii genes, AY585350, AY585354, AY585355 and AY585356 matched GluD3-4, GluD3-5, GluD3-1 and GluD3-2 of common wheat, respectively, and one pseudogene AY585351 matched to GluD3-6, but none of them matched to GluD3-3. In order to identify the Glu-D3 genes from Ae. tauschii corresponding to GluD3-3 and GluD3-6 of common wheat, gene specific primers were developed to amplify 8–18 Ae. tauschii entries. As a result, two novel Glu-D3 genes, designated as GluDt3-3 and GluDt3-6, were identified. GluDt3-3 showed seven allelic variants or haplotypes at the DNA level in eight Ae. tauschii entries, designated as GluDt3-31, GluDt3-32, GluDt3-33, GluDt3-34, GluDt3-35, GluDt3-36 and GluDt3-37, respectively. Two to eight SNPs were found among the seven haplotypes and 1–4 amino acid substitutions among the deduced peptides. Multiple sequence alignments showed that the DNA similarity was 99.6–99.9% among the seven GluDt3-3 haplotypes, and 99.4–99.7% between these haplotypes and those of common wheat GluD3-3 gene. GluDt3-6 presented seven haplotypes in 18 Ae. tauschii entries, designated as GluDt3-61, GluDt3-62, GluDt3-63, GluDt3-64, GluDt3-65, GluDt3-66 and GluDt3-67, respectively. GluDt3-61 from Ae. tauschii entry Ae38 was the only one haplotype with complete coding sequence, and the other six were all pseudogenes. Compared with GluD3-6 gene of common wheat, GluDt3-61 exhibited a 3-bp insertion, a 42-bp deletion and 11 base substitutions, leading to a glutamine insertion in position 52, 14 amino acid deletion in position 84–97 and 10 amino acid mutations in its deduced peptide; GluDt3-62 and GluDt3-63 showed a 6-bp insertion, a 24-bp deletion and 15–21 base substitutions in coding region, of which a nonsense mutation from C to T at position 622 resulted in pseudogenes; GluDt3-64 had five base substitution, including a nonsense mutation at the position 742. GluDt3-65, GluDt3-66 and GluDt3-67 all had a base deletion at position 247, as well as 7–8 base substitutions, which resulted in frameshift mutations in the three haplotypes. The results indicated that Ae. tauschii also contains six Glu-D3 genes and their allelic variants are even richer than those in common wheat." @default.
• W1939619511 created "2016-06-24" @default.
• W1939619511 creator A5016561044 @default.
• W1939619511 creator A5041261798 @default.
• W1939619511 creator A5050114121 @default.
• W1939619511 creator A5066465719 @default.
• W1939619511 creator A5074128996 @default.
• W1939619511 creator A5081774736 @default.
• W1939619511 creator A5088912755 @default.
• W1939619511 date "2008-10-27" @default.
• W1939619511 modified "2023-10-18" @default.
• W1939619511 title "Characterization of novel LMW-GS genes at Glu-D3 locus on chromosome 1D in Aegilops tauschii" @default.
• W1939619511 cites W1675312906 @default.
• W1939619511 cites W1967984636 @default.
• W1939619511 cites W1977021446 @default.
• W1939619511 cites W1979513596 @default.
• W1939619511 cites W1981150935 @default.
• W1939619511 cites W1997105142 @default.
• W1939619511 cites W2010743322 @default.
• W1939619511 cites W2032286820 @default.
• W1939619511 cites W2036102172 @default.
• W1939619511 cites W2049592512 @default.
• W1939619511 cites W2052949126 @default.
• W1939619511 cites W2056822401 @default.
• W1939619511 cites W2069428249 @default.
• W1939619511 cites W2069869910 @default.
• W1939619511 cites W2073333430 @default.
• W1939619511 cites W2084240934 @default.
• W1939619511 cites W2087263227 @default.
• W1939619511 cites W2088954912 @default.
• W1939619511 cites W2094192007 @default.
• W1939619511 cites W2122621610 @default.
• W1939619511 cites W2149631285 @default.
• W1939619511 cites W42333691 @default.
• W1939619511 doi "https://doi.org/10.1111/j.1601-5223.2008.02046.x" @default.
• W1939619511 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/19076692" @default.
• W1939619511 hasPublicationYear "2008" @default.
• W1939619511 type Work @default.
• W1939619511 sameAs 1939619511 @default.
• W1939619511 citedByCount "8" @default.
• W1939619511 countsByYear W19396195112016 @default.
• W1939619511 countsByYear W19396195112019 @default.
• W1939619511 countsByYear W19396195112022 @default.
• W1939619511 crossrefType "journal-article" @default.
• W1939619511 hasAuthorship W1939619511A5016561044 @default.
• W1939619511 hasAuthorship W1939619511A5041261798 @default.
• W1939619511 hasAuthorship W1939619511A5050114121 @default.
• W1939619511 hasAuthorship W1939619511A5066465719 @default.
• W1939619511 hasAuthorship W1939619511A5074128996 @default.
• W1939619511 hasAuthorship W1939619511A5081774736 @default.
• W1939619511 hasAuthorship W1939619511A5088912755 @default.
• W1939619511 hasBestOaLocation W19396195111 @default.
• W1939619511 hasConcept C104317684 @default.
• W1939619511 hasConcept C141231307 @default.
• W1939619511 hasConcept C180754005 @default.
• W1939619511 hasConcept C197754878 @default.
• W1939619511 hasConcept C2778083003 @default.
• W1939619511 hasConcept C30481170 @default.
• W1939619511 hasConcept C34957205 @default.
• W1939619511 hasConcept C54355233 @default.
• W1939619511 hasConcept C61053724 @default.
• W1939619511 hasConcept C79029880 @default.
• W1939619511 hasConcept C84597430 @default.
• W1939619511 hasConcept C86803240 @default.
• W1939619511 hasConceptScore W1939619511C104317684 @default.
• W1939619511 hasConceptScore W1939619511C141231307 @default.
• W1939619511 hasConceptScore W1939619511C180754005 @default.
• W1939619511 hasConceptScore W1939619511C197754878 @default.
• W1939619511 hasConceptScore W1939619511C2778083003 @default.
• W1939619511 hasConceptScore W1939619511C30481170 @default.
• W1939619511 hasConceptScore W1939619511C34957205 @default.
• W1939619511 hasConceptScore W1939619511C54355233 @default.
• W1939619511 hasConceptScore W1939619511C61053724 @default.
• W1939619511 hasConceptScore W1939619511C79029880 @default.
• W1939619511 hasConceptScore W1939619511C84597430 @default.
• W1939619511 hasConceptScore W1939619511C86803240 @default.
• W1939619511 hasIssue "5" @default.
• W1939619511 hasLocation W19396195111 @default.
• W1939619511 hasLocation W19396195112 @default.
• W1939619511 hasOpenAccess W1939619511 @default.
• W1939619511 hasPrimaryLocation W19396195111 @default.
• W1939619511 hasRelatedWork W1939619511 @default.
• W1939619511 hasRelatedWork W1981393315 @default.
• W1939619511 hasRelatedWork W1982749768 @default.
• W1939619511 hasRelatedWork W2046092378 @default.
• W1939619511 hasRelatedWork W2060631033 @default.
• W1939619511 hasRelatedWork W2082451158 @default.
• W1939619511 hasRelatedWork W2155294402 @default.
• W1939619511 hasRelatedWork W2383349985 @default.
• W1939619511 hasRelatedWork W2388546544 @default.
• W1939619511 hasRelatedWork W4281557605 @default.
• W1939619511 hasVolume "145" @default.
• W1939619511 isParatext "false" @default.
• W1939619511 isRetracted "false" @default.
• W1939619511 magId "1939619511" @default.
• W1939619511 workType "article" @default.