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- W1968356732 abstract "One in six cancers worldwide is caused by infection and human papillomavirus (HPV) is one of the main culprits. To better understand the dynamics of HPV integration and its effect on both the viral and host methylomes, we conducted whole-genome DNA methylation analysis using MeDIP-seq of HPV+ and HPV- head and neck squamous cell carcinoma (HNSCC). We determined the viral subtype to be HPV-16 in all cases and show that HPV-16 integrates into the host genome at multiple random sites and that this process predominantly involves the transcriptional repressor gene (E2) in the viral genome. Comparative analysis identified 453 (FDR ≤ 0.01) differentially methylated regions (DMRs) in the HPV+ host methylome. Bioinformatics characterization of these DMRs confirmed the previously reported cadherin genes to be affected but also revealed new targets for HPV-mediated methylation changes at regions not covered by array-based platforms, including the recently identified super-enhancers." @default.
- W1968356732 created "2016-06-24" @default.
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- W1968356732 date "2013-09-01" @default.
- W1968356732 modified "2023-09-30" @default.
- W1968356732 title "Integrated virus-host methylome analysis in head and neck squamous cell carcinoma" @default.
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- W1968356732 doi "https://doi.org/10.4161/epi.25614" @default.
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