FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W1992312974> ?p ?o ?g. }

• W1992312974 endingPage "W34" @default.
• W1992312974 startingPage "W29" @default.
• W1992312974 abstract "We present the jump-start simultaneous alignment and tree construction using hidden Markov models (SATCHMO-JS) web server for simultaneous estimation of protein multiple sequence alignments (MSAs) and phylogenetic trees. The server takes as input a set of sequences in FASTA format, and outputs a phylogenetic tree and MSA; these can be viewed online or downloaded from the website. SATCHMO-JS is an extension of the SATCHMO algorithm, and employs a divide-and-conquer strategy to jump-start SATCHMO at a higher point in the phylogenetic tree, reducing the computational complexity of the progressive all-versus-all HMM-HMM scoring and alignment. Results on a benchmark dataset of 983 structurally aligned pairs from the PREFAB benchmark dataset show that SATCHMO-JS provides a statistically significant improvement in alignment accuracy over MUSCLE, Multiple Alignment using Fast Fourier Transform (MAFFT), ClustalW and the original SATCHMO algorithm. The SATCHMO-JS webserver is available at http://phylogenomics.berkeley.edu/satchmo-js. The datasets used in these experiments are available for download at http://phylogenomics.berkeley.edu/satchmo-js/supplementary/." @default.
• W1992312974 created "2016-06-24" @default.
• W1992312974 creator A5003430647 @default.
• W1992312974 creator A5023019617 @default.
• W1992312974 creator A5034710937 @default.
• W1992312974 creator A5036130616 @default.
• W1992312974 creator A5066147479 @default.
• W1992312974 creator A5067094572 @default.
• W1992312974 date "2010-04-29" @default.
• W1992312974 modified "2023-10-01" @default.
• W1992312974 title "SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction" @default.
• W1992312974 cites W1508885706 @default.
• W1992312974 cites W1965309444 @default.
• W1992312974 cites W2007668764 @default.
• W1992312974 cites W2009406556 @default.
• W1992312974 cites W2016279534 @default.
• W1992312974 cites W2027542060 @default.
• W1992312974 cites W2055033601 @default.
• W1992312974 cites W2102524821 @default.
• W1992312974 cites W2110534451 @default.
• W1992312974 cites W2117752525 @default.
• W1992312974 cites W2118488195 @default.
• W1992312974 cites W2119362018 @default.
• W1992312974 cites W2119801041 @default.
• W1992312974 cites W2120772351 @default.
• W1992312974 cites W2124815061 @default.
• W1992312974 cites W2132395520 @default.
• W1992312974 cites W2132926880 @default.
• W1992312974 cites W2137015675 @default.
• W1992312974 cites W2140872496 @default.
• W1992312974 cites W2142529984 @default.
• W1992312974 cites W2144362290 @default.
• W1992312974 cites W2144965592 @default.
• W1992312974 cites W2159500193 @default.
• W1992312974 cites W2162566191 @default.
• W1992312974 cites W2164652663 @default.
• W1992312974 cites W2168508791 @default.
• W1992312974 doi "https://doi.org/10.1093/nar/gkq298" @default.
• W1992312974 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/2896197" @default.
• W1992312974 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/20430824" @default.
• W1992312974 hasPublicationYear "2010" @default.
• W1992312974 type Work @default.
• W1992312974 sameAs 1992312974 @default.
• W1992312974 citedByCount "23" @default.
• W1992312974 countsByYear W19923129742012 @default.
• W1992312974 countsByYear W19923129742013 @default.
• W1992312974 countsByYear W19923129742014 @default.
• W1992312974 countsByYear W19923129742016 @default.
• W1992312974 countsByYear W19923129742020 @default.
• W1992312974 countsByYear W19923129742021 @default.
• W1992312974 countsByYear W19923129742023 @default.
• W1992312974 crossrefType "journal-article" @default.
• W1992312974 hasAuthorship W1992312974A5003430647 @default.
• W1992312974 hasAuthorship W1992312974A5023019617 @default.
• W1992312974 hasAuthorship W1992312974A5034710937 @default.
• W1992312974 hasAuthorship W1992312974A5036130616 @default.
• W1992312974 hasAuthorship W1992312974A5066147479 @default.
• W1992312974 hasAuthorship W1992312974A5067094572 @default.
• W1992312974 hasBestOaLocation W19923129741 @default.
• W1992312974 hasConcept C104317684 @default.
• W1992312974 hasConcept C110875604 @default.
• W1992312974 hasConcept C113174947 @default.
• W1992312974 hasConcept C11392498 @default.
• W1992312974 hasConcept C13280743 @default.
• W1992312974 hasConcept C134306372 @default.
• W1992312974 hasConcept C136764020 @default.
• W1992312974 hasConcept C154945302 @default.
• W1992312974 hasConcept C167625842 @default.
• W1992312974 hasConcept C177264268 @default.
• W1992312974 hasConcept C185798385 @default.
• W1992312974 hasConcept C193252679 @default.
• W1992312974 hasConcept C199360897 @default.
• W1992312974 hasConcept C205649164 @default.
• W1992312974 hasConcept C23224414 @default.
• W1992312974 hasConcept C2778112365 @default.
• W1992312974 hasConcept C33923547 @default.
• W1992312974 hasConcept C41008148 @default.
• W1992312974 hasConcept C44465124 @default.
• W1992312974 hasConcept C45484198 @default.
• W1992312974 hasConcept C54355233 @default.
• W1992312974 hasConcept C70343354 @default.
• W1992312974 hasConcept C70721500 @default.
• W1992312974 hasConcept C86803240 @default.
• W1992312974 hasConcept C88031987 @default.
• W1992312974 hasConceptScore W1992312974C104317684 @default.
• W1992312974 hasConceptScore W1992312974C110875604 @default.
• W1992312974 hasConceptScore W1992312974C113174947 @default.
• W1992312974 hasConceptScore W1992312974C11392498 @default.
• W1992312974 hasConceptScore W1992312974C13280743 @default.
• W1992312974 hasConceptScore W1992312974C134306372 @default.
• W1992312974 hasConceptScore W1992312974C136764020 @default.
• W1992312974 hasConceptScore W1992312974C154945302 @default.
• W1992312974 hasConceptScore W1992312974C167625842 @default.
• W1992312974 hasConceptScore W1992312974C177264268 @default.
• W1992312974 hasConceptScore W1992312974C185798385 @default.
• W1992312974 hasConceptScore W1992312974C193252679 @default.
• W1992312974 hasConceptScore W1992312974C199360897 @default.
• W1992312974 hasConceptScore W1992312974C205649164 @default.

• next