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- W1999128423 abstract "Abstract Gene sequence similarity due to shared ancestry after a duplication event, that is paralogy, complicates the assessment of genetic variation, as sequences originating from paralogs can be difficult to distinguish. These confounded sequences are often removed prior to further analyses, leaving the underlying loci uncharacterized. Salmonids have only partially rediploidized subsequent to a whole‐genome duplication; residual tetrasomic inheritance has been observed in males. We present a maximum‐likelihood‐based method to resolve confounded paralogous loci by observing the segregation of alleles in gynogenetic haploid offspring and demonstrate its effectiveness by constructing two linkage maps for chum salmon ( Oncorhynchus keta ), with and without these newly resolved loci. We find that the resolved paralogous loci are not randomly distributed across the genome. A majority are clustered in expanded subtelomeric regions of 14 linkage groups, suggesting a significant fraction of the chum salmon genome may be missed by the exclusion of paralogous loci. Transposable elements have been proposed as drivers of genome evolution and, in salmonids, may have an important role in the rediploidization process by driving differentiation between homeologous chromosomes. Consistent with that hypothesis, we find a reduced fraction of transposable element annotations among paralogous loci, and these loci predominately occur in the genomic regions that lag in the rediploidization process." @default.
- W1999128423 created "2016-06-24" @default.
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- W1999128423 creator A5035948845 @default.
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- W1999128423 date "2015-03-11" @default.
- W1999128423 modified "2023-10-03" @default.
- W1999128423 title "Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (<i>Oncorhynchus keta</i>)" @default.
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- W1999128423 cites W1996294714 @default.
- W1999128423 cites W1999245186 @default.
- W1999128423 cites W2007600372 @default.
- W1999128423 cites W2009867049 @default.
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- W1999128423 doi "https://doi.org/10.1111/1755-0998.12394" @default.
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