FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W1999129612> ?p ?o ?g. }

• W1999129612 abstract "Abstract Background Despite the improvements of tools for automated annotation of genome sequences, manual curation at the structural and functional level can provide an increased level of refinement to genome annotation. The Institute for Genomic Research Rice Genome Annotation (hereafter named the Osa1 Genome Annotation) is the product of an automated pipeline and, for this reason, will benefit from the input of biologists with expertise in rice and/or particular gene families. Leveraging knowledge from a dispersed community of scientists is a demonstrated way of improving a genome annotation. This requires tools that facilitate 1) the submission of gene annotation to an annotation project, 2) the review of the submitted models by project annotators, and 3) the incorporation of the submitted models in the ongoing annotation effort. Results We have developed the Eukaryotic Community Annotation Package (EuCAP), an annotation tool, and have applied it to the rice genome. The primary level of curation by community annotators (CA) has been the annotation of gene families. Annotation can be submitted by email or through the EuCAP Web Tool. The CA models are aligned to the rice pseudomolecules and the coordinates of these alignments, along with functional annotation, are stored in the MySQL EuCAP Gene Model database. Web pages displaying the alignments of the CA models to the Osa1 Genome models are automatically generated from the EuCAP Gene Model database. The alignments are reviewed by the project annotators (PAs) in the context of experimental evidence. Upon approval by the PAs, the CA models, along with the corresponding functional annotations, are integrated into the Osa1 Genome Annotation. The CA annotations, grouped by family, are displayed on the Community Annotation pages of the project website http://rice.tigr.org , as well as in the Community Annotation track of the Genome Browser. Conclusion We have applied EuCAP to rice. As of July 2007, the structural and/or functional annotation of 1,094 genes representing 57 families have been deposited and integrated into the current gene set. All of the EuCAP components are open-source, thereby allowing the implementation of EuCAP for the annotation of other genomes. EuCAP is available at http://sourceforge.net/projects/eucap/ ." @default.
• W1999129612 created "2016-06-24" @default.
• W1999129612 creator A5024440200 @default.
• W1999129612 creator A5039928314 @default.
• W1999129612 creator A5045742761 @default.
• W1999129612 creator A5047462066 @default.
• W1999129612 creator A5067372278 @default.
• W1999129612 date "2007-10-25" @default.
• W1999129612 modified "2023-10-07" @default.
• W1999129612 title "EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome" @default.
• W1999129612 cites W1488086388 @default.
• W1999129612 cites W1494075612 @default.
• W1999129612 cites W1584560290 @default.
• W1999129612 cites W1605966547 @default.
• W1999129612 cites W1966134030 @default.
• W1999129612 cites W1973586570 @default.
• W1999129612 cites W1991882465 @default.
• W1999129612 cites W1992395246 @default.
• W1999129612 cites W1994280615 @default.
• W1999129612 cites W2007872210 @default.
• W1999129612 cites W2017568996 @default.
• W1999129612 cites W2065355365 @default.
• W1999129612 cites W2071405543 @default.
• W1999129612 cites W2072285646 @default.
• W1999129612 cites W2079241323 @default.
• W1999129612 cites W2081960755 @default.
• W1999129612 cites W2105767242 @default.
• W1999129612 cites W2106678197 @default.
• W1999129612 cites W2115537330 @default.
• W1999129612 cites W2115950489 @default.
• W1999129612 cites W2116027790 @default.
• W1999129612 cites W2118556605 @default.
• W1999129612 cites W2129293106 @default.
• W1999129612 cites W2132771775 @default.
• W1999129612 cites W2138473401 @default.
• W1999129612 cites W2139430573 @default.
• W1999129612 cites W2140498399 @default.
• W1999129612 cites W2141165178 @default.
• W1999129612 cites W2141362201 @default.
• W1999129612 cites W2144921226 @default.
• W1999129612 cites W2146210238 @default.
• W1999129612 cites W2160810865 @default.
• W1999129612 cites W2167272207 @default.
• W1999129612 cites W2175948239 @default.
• W1999129612 doi "https://doi.org/10.1186/1471-2164-8-388" @default.
• W1999129612 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/2151081" @default.
• W1999129612 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/17961238" @default.
• W1999129612 hasPublicationYear "2007" @default.
• W1999129612 type Work @default.
• W1999129612 sameAs 1999129612 @default.
• W1999129612 citedByCount "6" @default.
• W1999129612 countsByYear W19991296122014 @default.
• W1999129612 crossrefType "journal-article" @default.
• W1999129612 hasAuthorship W1999129612A5024440200 @default.
• W1999129612 hasAuthorship W1999129612A5039928314 @default.
• W1999129612 hasAuthorship W1999129612A5045742761 @default.
• W1999129612 hasAuthorship W1999129612A5047462066 @default.
• W1999129612 hasAuthorship W1999129612A5067372278 @default.
• W1999129612 hasBestOaLocation W19991296121 @default.
• W1999129612 hasConcept C104317684 @default.
• W1999129612 hasConcept C141231307 @default.
• W1999129612 hasConcept C151730666 @default.
• W1999129612 hasConcept C154945302 @default.
• W1999129612 hasConcept C189206191 @default.
• W1999129612 hasConcept C23123220 @default.
• W1999129612 hasConcept C2776321320 @default.
• W1999129612 hasConcept C2779343474 @default.
• W1999129612 hasConcept C2781148417 @default.
• W1999129612 hasConcept C2908923196 @default.
• W1999129612 hasConcept C41008148 @default.
• W1999129612 hasConcept C54355233 @default.
• W1999129612 hasConcept C70721500 @default.
• W1999129612 hasConcept C86803240 @default.
• W1999129612 hasConcept C89566754 @default.
• W1999129612 hasConceptScore W1999129612C104317684 @default.
• W1999129612 hasConceptScore W1999129612C141231307 @default.
• W1999129612 hasConceptScore W1999129612C151730666 @default.
• W1999129612 hasConceptScore W1999129612C154945302 @default.
• W1999129612 hasConceptScore W1999129612C189206191 @default.
• W1999129612 hasConceptScore W1999129612C23123220 @default.
• W1999129612 hasConceptScore W1999129612C2776321320 @default.
• W1999129612 hasConceptScore W1999129612C2779343474 @default.
• W1999129612 hasConceptScore W1999129612C2781148417 @default.
• W1999129612 hasConceptScore W1999129612C2908923196 @default.
• W1999129612 hasConceptScore W1999129612C41008148 @default.
• W1999129612 hasConceptScore W1999129612C54355233 @default.
• W1999129612 hasConceptScore W1999129612C70721500 @default.
• W1999129612 hasConceptScore W1999129612C86803240 @default.
• W1999129612 hasConceptScore W1999129612C89566754 @default.
• W1999129612 hasIssue "1" @default.
• W1999129612 hasLocation W19991296121 @default.
• W1999129612 hasLocation W19991296122 @default.
• W1999129612 hasLocation W19991296123 @default.
• W1999129612 hasLocation W19991296124 @default.
• W1999129612 hasOpenAccess W1999129612 @default.
• W1999129612 hasPrimaryLocation W19991296121 @default.
• W1999129612 hasRelatedWork W110079389 @default.
• W1999129612 hasRelatedWork W1976142521 @default.
• W1999129612 hasRelatedWork W1984345785 @default.
• W1999129612 hasRelatedWork W2099626126 @default.

• next