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- W2000486135 abstract "We propose a hierarchical reduction scheme to cope with coupled rate equations that describe the dynamics of multi-time-scale photosynthetic reactions. To numerically solve nonlinear dynamical equations containing a wide temporal range of rate constants, we first study a prototypical three-variable model. Using a separation of the time scale of rate constants combined with identified slow variables as (quasi-)conserved quantities in the fast process, we achieve a coarse-graining of the dynamical equations reduced to those at a slower time scale. By iteratively employing this reduction method, the coarse-graining of broadly multi-scale dynamical equations can be performed in a hierarchical manner. We then apply this scheme to the reaction dynamics analysis of a simplified model for an illuminated photosystem II, which involves many processes of electron and excitation-energy transfers with a wide range of rate constants. We thus confirm a good agreement between the coarse-grained and fully (finely) integrated results for the population dynamics." @default.
- W2000486135 created "2016-06-24" @default.
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- W2000486135 date "2014-03-01" @default.
- W2000486135 modified "2023-10-16" @default.
- W2000486135 title "Hierarchical coarse-graining model for photosystem II including electron and excitation-energy transfer processes" @default.
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- W2000486135 doi "https://doi.org/10.1016/j.biosystems.2013.12.008" @default.
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