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- W2001775237 abstract "Multi-task parallel algorithm is applied to accelerate the program of DNA Sequence Reads Compressor (DSRC), which is specialized for compressing DNA sequencing data file - FASTQ format file. The compression process is first divided into two parallel tasks: data process task and data input task. Then, the data process task is further divided into two parts: Title data process part and other data process part. Three high parallelism models for the Title data processing are developed: multi-CPU model, CPU+GPU model and CPU+MIC model. All three models are tested, and the result shows that nearly 3x acceleration can be achieved. The maximum throughput observed among all tested cases is 144MB/S, and the average throughput is 120MB/S. Research finds that the acceleration ratio depends on the types of sequencing platforms. The program performs better on data from the ILLUMINA and SOLiD sequencing platforms." @default.
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- W2001775237 date "2014-01-01" @default.
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- W2001775237 title "Multi-task Parallel Algorithm for DSRC" @default.
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- W2001775237 doi "https://doi.org/10.1016/j.procs.2014.05.369" @default.
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