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- W2003447887 abstract "The TATA box is one of the best characterized transcription factor binding sites. However, it is not a ubiquitous element of core promoters, and other sequence motifs such as Y Patches seem to play a major role in plants. Here, we present a first genome-wide computational analysis of the TATA box and Y Patch distribution in rice (Oryza sativa L. subsp. japonica) promoter sequences. Utilizing a probabilistic sequence model, we ascertain that only approximately 19% of rice genes possess the TATA box, but approximately 50% contain one or more Y Patches in their core promoters. By computational processing of identified elements, we generated extended TATA box and Y Patch nucleotide frequency matrices capable of predicting these motifs in plants with a high degree of confidence." @default.
- W2003447887 created "2016-06-24" @default.
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- W2003447887 date "2009-03-01" @default.
- W2003447887 modified "2023-10-09" @default.
- W2003447887 title "Genome-wide analysis of rice (<i>Oryza sativa</i> L. subsp. <i>japonica</i>) TATA box and Y Patch promoter elements" @default.
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- W2003447887 doi "https://doi.org/10.1139/g09-001" @default.
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