FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2005368996> ?p ?o ?g. }

• W2005368996 endingPage "116" @default.
• W2005368996 startingPage "108" @default.
• W2005368996 abstract "The UniCarb-DB database is an emerging public glycomics data repository, containing over 500 tandem mass spectra (as of March 2013) of glycans released from glycoproteins. A major challenge in glycomics research is to provide and maintain high-quality datasets that will offer the necessary diversity to support the development of accurate bioinformatics tools for data deposition and analysis. The role of UniCarb-DB, as an archival database, is to provide the glycomics community with open-access to a comprehensive LC MS/MS library of N- and O- linked glycans released from glycoproteins that have been annotated with glycosidic and cross-ring fragmentation ions, retention times, and associated experimental metadata descriptions. Here, we introduce the UniCarb-DB data submission pipeline and its practical application to construct a library of LC-MS/MS glycan standards that forms part of this database. In this context, an independent consortium of three laboratories was established to analyze the same 23 commercially available oligosaccharide standards, all by using graphitized carbon-liquid chromatography (LC) electrospray ionization (ESI) ion trap mass spectrometry in the negative ion mode. A dot product score was calculated for each spectrum in the three sets of data as a measure of the comparability that is necessary for use of such a collection in library-based spectral matching and glycan structural identification. The effects of charge state, de-isotoping and threshold levels on the quality of the input data are shown. The provision of well-characterized oligosaccharide fragmentation data provides the opportunity to identify determinants of specific glycan structures, and will contribute to the confidence level of algorithms that assign glycan structures to experimental MS/MS spectra. This article is part of a Special Issue entitled: Computational Proteomics in the Post-Identification Era. Guest Editors: Martin Eisenacher and Christian Stephan." @default.
• W2005368996 created "2016-06-24" @default.
• W2005368996 creator A5006679587 @default.
• W2005368996 creator A5010970173 @default.
• W2005368996 creator A5018317721 @default.
• W2005368996 creator A5020306466 @default.
• W2005368996 creator A5043680660 @default.
• W2005368996 creator A5059491004 @default.
• W2005368996 creator A5064775072 @default.
• W2005368996 creator A5084380350 @default.
• W2005368996 date "2014-01-01" @default.
• W2005368996 modified "2023-09-23" @default.
• W2005368996 title "Validation of the curation pipeline of UniCarb-DB: Building a global glycan reference MS/MS repository" @default.
• W2005368996 cites W1492032298 @default.
• W2005368996 cites W1965149358 @default.
• W2005368996 cites W1969592341 @default.
• W2005368996 cites W1976388576 @default.
• W2005368996 cites W1976484683 @default.
• W2005368996 cites W1980437202 @default.
• W2005368996 cites W1984305420 @default.
• W2005368996 cites W1986540029 @default.
• W2005368996 cites W1989506846 @default.
• W2005368996 cites W1989728131 @default.
• W2005368996 cites W1992886596 @default.
• W2005368996 cites W2000475809 @default.
• W2005368996 cites W2007058937 @default.
• W2005368996 cites W2012245293 @default.
• W2005368996 cites W2016009728 @default.
• W2005368996 cites W2023497507 @default.
• W2005368996 cites W2029586927 @default.
• W2005368996 cites W2031126461 @default.
• W2005368996 cites W2034456933 @default.
• W2005368996 cites W2036493629 @default.
• W2005368996 cites W2075672935 @default.
• W2005368996 cites W2076975212 @default.
• W2005368996 cites W2080105457 @default.
• W2005368996 cites W2080487519 @default.
• W2005368996 cites W2087735019 @default.
• W2005368996 cites W2092218193 @default.
• W2005368996 cites W2100196601 @default.
• W2005368996 cites W2103346576 @default.
• W2005368996 cites W2112063245 @default.
• W2005368996 cites W2124539321 @default.
• W2005368996 cites W2125674325 @default.
• W2005368996 cites W2138956724 @default.
• W2005368996 cites W2143278970 @default.
• W2005368996 cites W2164722178 @default.
• W2005368996 cites W2280797896 @default.
• W2005368996 doi "https://doi.org/10.1016/j.bbapap.2013.04.018" @default.
• W2005368996 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23624262" @default.
• W2005368996 hasPublicationYear "2014" @default.
• W2005368996 type Work @default.
• W2005368996 sameAs 2005368996 @default.
• W2005368996 citedByCount "56" @default.
• W2005368996 countsByYear W20053689962014 @default.
• W2005368996 countsByYear W20053689962015 @default.
• W2005368996 countsByYear W20053689962016 @default.
• W2005368996 countsByYear W20053689962017 @default.
• W2005368996 countsByYear W20053689962018 @default.
• W2005368996 countsByYear W20053689962019 @default.
• W2005368996 countsByYear W20053689962020 @default.
• W2005368996 countsByYear W20053689962021 @default.
• W2005368996 countsByYear W20053689962022 @default.
• W2005368996 countsByYear W20053689962023 @default.
• W2005368996 crossrefType "journal-article" @default.
• W2005368996 hasAuthorship W2005368996A5006679587 @default.
• W2005368996 hasAuthorship W2005368996A5010970173 @default.
• W2005368996 hasAuthorship W2005368996A5018317721 @default.
• W2005368996 hasAuthorship W2005368996A5020306466 @default.
• W2005368996 hasAuthorship W2005368996A5043680660 @default.
• W2005368996 hasAuthorship W2005368996A5059491004 @default.
• W2005368996 hasAuthorship W2005368996A5064775072 @default.
• W2005368996 hasAuthorship W2005368996A5084380350 @default.
• W2005368996 hasConcept C106686826 @default.
• W2005368996 hasConcept C108625454 @default.
• W2005368996 hasConcept C113196181 @default.
• W2005368996 hasConcept C114614502 @default.
• W2005368996 hasConcept C162356407 @default.
• W2005368996 hasConcept C185592680 @default.
• W2005368996 hasConcept C197947376 @default.
• W2005368996 hasConcept C206212055 @default.
• W2005368996 hasConcept C31827203 @default.
• W2005368996 hasConcept C33923547 @default.
• W2005368996 hasConcept C41008148 @default.
• W2005368996 hasConcept C43617362 @default.
• W2005368996 hasConcept C55493867 @default.
• W2005368996 hasConcept C70721500 @default.
• W2005368996 hasConcept C86803240 @default.
• W2005368996 hasConceptScore W2005368996C106686826 @default.
• W2005368996 hasConceptScore W2005368996C108625454 @default.
• W2005368996 hasConceptScore W2005368996C113196181 @default.
• W2005368996 hasConceptScore W2005368996C114614502 @default.
• W2005368996 hasConceptScore W2005368996C162356407 @default.
• W2005368996 hasConceptScore W2005368996C185592680 @default.
• W2005368996 hasConceptScore W2005368996C197947376 @default.
• W2005368996 hasConceptScore W2005368996C206212055 @default.
• W2005368996 hasConceptScore W2005368996C31827203 @default.
• W2005368996 hasConceptScore W2005368996C33923547 @default.

• next