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- W2006883144 abstract "We have developed a semi-automatic methodology to reconstruct the phylogenetic species tree in Protozoa, integrating different phylogenetic algorithms and programs, and demonstrating the utility of a supermatrix approach to construct phylogenomics-based trees using 31 universal orthologs (UO). The species tree obtained was formed by three major clades that were related to three groups of data: i) Species containing at least 80% of UO (25/31) in the concatenated multiple alignment or supermatrix, this clade was called C1, ii) Species containing between 50%-79% (15-24/31) of UO called C2, and iii) Species containing less than 50% (1-14/31) of UO called C3. C1 was composed by only protozoan species, C2 was composed by species related to Protozoa, and C3 was composed by some species of C1 (Protozoa) and C2 (related to Protozoa). Our phylogenomics-based methodology using a supermatrix approach proved to be reliable with protozoan genome data and using at least 25 UO, suggesting that (a) the more UO used the better, (b) using the entire UO sequence or just a conserved block of it for the supermatrix produced similar phylogenomic trees." @default.
- W2006883144 created "2016-06-24" @default.
- W2006883144 creator A5024614936 @default.
- W2006883144 creator A5042169127 @default.
- W2006883144 date "2011-01-01" @default.
- W2006883144 modified "2023-09-27" @default.
- W2006883144 title "Phylogenomics-Based Reconstruction of Protozoan Species Tree" @default.
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- W2006883144 doi "https://doi.org/10.4137/ebo.s6861" @default.
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