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• W2006989246 endingPage "e40653" @default.
• W2006989246 startingPage "e40653" @default.
• W2006989246 abstract "Bacteria were identified associated with biodegradation of aromatic pollutants biphenyl, benzoate, and naphthalene in a long-term polychlorinated biphenyl- and polyaromatic hydrocarbon-contaminated soil. In order to avoid biases of culture-based approaches, stable isotope probing was applied in combination with sequence analysis of 16 S rRNA gene pyrotags amplified from (13)C-enriched DNA fractions. Special attention was paid to pyrosequencing data analysis in order to eliminate the errors caused by either generation of amplicons (random errors caused by DNA polymerase, formation of chimeric sequences) or sequencing itself. Therefore, sample DNA was amplified, sequenced, and analyzed along with the DNA of a mock community constructed out of 8 bacterial strains. This warranted that appropriate tools and parameters were chosen for sequence data processing. (13)C-labeled metagenomes isolated after the incubation of soil samples with all three studied aromatics were largely dominated by Proteobacteria, namely sequences clustering with the genera Rhodanobacter Burkholderia, Pandoraea, Dyella as well as some Rudaea- and Skermanella-related ones. Pseudomonads were mostly labeled by (13)C from naphthalene and benzoate. The results of this study show that many biphenyl/benzoate-assimilating bacteria derive carbon also from naphthalene, pointing out broader biodegradation abilities of some soil microbiota. The results also demonstrate that, in addition to traditionally isolated genera of degradative bacteria, yet-to-be cultured bacteria are important players in bioremediation. Overall, the study contributes to our understanding of biodegradation processes in contaminated soil. At the same time our results show the importance of sequencing and analyzing a mock community in order to more correctly process and analyze sequence data." @default.
• W2006989246 created "2016-06-24" @default.
• W2006989246 creator A5023003882 @default.
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• W2006989246 creator A5079297169 @default.
• W2006989246 date "2012-07-13" @default.
• W2006989246 modified "2023-10-18" @default.
• W2006989246 title "Identification of Bacteria Utilizing Biphenyl, Benzoate, and Naphthalene in Long-Term Contaminated Soil" @default.
• W2006989246 cites W1513168266 @default.
• W2006989246 cites W1518560282 @default.
• W2006989246 cites W1537423632 @default.
• W2006989246 cites W1569026702 @default.
• W2006989246 cites W1569833668 @default.
• W2006989246 cites W1574491604 @default.
• W2006989246 cites W1673006858 @default.
• W2006989246 cites W1794545718 @default.
• W2006989246 cites W1920687365 @default.
• W2006989246 cites W1945500033 @default.
• W2006989246 cites W1963709919 @default.
• W2006989246 cites W1966225313 @default.
• W2006989246 cites W1967927148 @default.
• W2006989246 cites W1972930189 @default.
• W2006989246 cites W1977031342 @default.
• W2006989246 cites W1977538499 @default.
• W2006989246 cites W1980067271 @default.
• W2006989246 cites W1983028878 @default.
• W2006989246 cites W1988471260 @default.
• W2006989246 cites W1989097861 @default.
• W2006989246 cites W1991486768 @default.
• W2006989246 cites W1996332483 @default.
• W2006989246 cites W2000072710 @default.
• W2006989246 cites W2000788074 @default.
• W2006989246 cites W2001656386 @default.
• W2006989246 cites W2001787134 @default.
• W2006989246 cites W2002685115 @default.
• W2006989246 cites W2010786269 @default.
• W2006989246 cites W2016568121 @default.
• W2006989246 cites W2017529053 @default.
• W2006989246 cites W2017848267 @default.
• W2006989246 cites W2017859357 @default.
• W2006989246 cites W2018541220 @default.
• W2006989246 cites W2021526724 @default.
• W2006989246 cites W2022742799 @default.
• W2006989246 cites W2036647435 @default.
• W2006989246 cites W2042990962 @default.
• W2006989246 cites W2051750861 @default.
• W2006989246 cites W2055057012 @default.
• W2006989246 cites W2059695210 @default.
• W2006989246 cites W2062539478 @default.
• W2006989246 cites W2063117169 @default.
• W2006989246 cites W2064012286 @default.
• W2006989246 cites W2064824531 @default.
• W2006989246 cites W2065641681 @default.
• W2006989246 cites W2075472879 @default.
• W2006989246 cites W2079070241 @default.
• W2006989246 cites W2080238265 @default.
• W2006989246 cites W2097364388 @default.
• W2006989246 cites W2097655308 @default.
• W2006989246 cites W2098182293 @default.
• W2006989246 cites W2098225778 @default.
• W2006989246 cites W2101111444 @default.
• W2006989246 cites W2101818957 @default.
• W2006989246 cites W2102211317 @default.
• W2006989246 cites W2103412200 @default.
• W2006989246 cites W2106308757 @default.
• W2006989246 cites W2108499135 @default.
• W2006989246 cites W2108718991 @default.
• W2006989246 cites W2108914075 @default.
• W2006989246 cites W2110691774 @default.
• W2006989246 cites W2113492493 @default.
• W2006989246 cites W2119691333 @default.
• W2006989246 cites W2123454928 @default.
• W2006989246 cites W2130247261 @default.
• W2006989246 cites W2130790655 @default.
• W2006989246 cites W2136879569 @default.
• W2006989246 cites W2138944089 @default.
• W2006989246 cites W2140006269 @default.
• W2006989246 cites W2140214062 @default.
• W2006989246 cites W2144923593 @default.
• W2006989246 cites W2148622609 @default.
• W2006989246 cites W2149184205 @default.
• W2006989246 cites W2150914285 @default.
• W2006989246 cites W2152885278 @default.
• W2006989246 cites W2154163784 @default.
• W2006989246 cites W2155066423 @default.
• W2006989246 cites W2157032655 @default.
• W2006989246 cites W2158421363 @default.
• W2006989246 cites W2161024432 @default.
• W2006989246 cites W2161645513 @default.
• W2006989246 cites W2163236435 @default.
• W2006989246 cites W2163568680 @default.

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