FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2014067266> ?p ?o ?g. }

• W2014067266 endingPage "354" @default.
• W2014067266 startingPage "348" @default.
• W2014067266 abstract "Fitting high resolution protein structures into low resolution cryo-electron microscopy (cryo-EM) density maps is an important technique for modeling the atomic structures of very large macromolecular assemblies. This article presents “gEMfitter”, a highly parallel fast Fourier transform (FFT) EM density fitting program which can exploit the special hardware properties of modern graphics processor units (GPUs) to accelerate both the translational and rotational parts of the correlation search. In particular, by using the GPU’s special texture memory hardware to rotate 3D voxel grids, the cost of rotating large 3D density maps is almost completely eliminated. Compared to performing 3D correlations on one core of a contemporary central processor unit (CPU), running gEMfitter on a modern GPU gives up to 26-fold speed-up. Furthermore, using our parallel processing framework, this speed-up increases linearly with the number of CPUs or GPUs used. Thus, it is now possible to use routinely more robust but more expensive 3D correlation techniques. When tested on low resolution experimental cryo-EM data for the GroEL–GroES complex, we demonstrate the satisfactory fitting results that may be achieved by using a locally normalised cross-correlation with a Laplacian pre-filter, while still being up to three orders of magnitude faster than the well-known COLORES program." @default.
• W2014067266 created "2016-06-24" @default.
• W2014067266 creator A5050082458 @default.
• W2014067266 creator A5067658311 @default.
• W2014067266 creator A5073919810 @default.
• W2014067266 date "2013-11-01" @default.
• W2014067266 modified "2023-10-16" @default.
• W2014067266 title "gEMfitter: A highly parallel FFT-based 3D density fitting tool with GPU texture memory acceleration" @default.
• W2014067266 cites W1652775531 @default.
• W2014067266 cites W1963686561 @default.
• W2014067266 cites W1964716020 @default.
• W2014067266 cites W1965564984 @default.
• W2014067266 cites W1966323820 @default.
• W2014067266 cites W1985684929 @default.
• W2014067266 cites W2000383223 @default.
• W2014067266 cites W2005752630 @default.
• W2014067266 cites W2007107624 @default.
• W2014067266 cites W2007351279 @default.
• W2014067266 cites W2008739377 @default.
• W2014067266 cites W2016113157 @default.
• W2014067266 cites W2026367652 @default.
• W2014067266 cites W2042455841 @default.
• W2014067266 cites W2046221312 @default.
• W2014067266 cites W2058690225 @default.
• W2014067266 cites W2075641906 @default.
• W2014067266 cites W2104130324 @default.
• W2014067266 cites W2112087820 @default.
• W2014067266 cites W2119342149 @default.
• W2014067266 cites W2119535256 @default.
• W2014067266 cites W2128897252 @default.
• W2014067266 cites W2132629607 @default.
• W2014067266 cites W2150008490 @default.
• W2014067266 cites W2158957977 @default.
• W2014067266 cites W2160223767 @default.
• W2014067266 cites W2170847085 @default.
• W2014067266 cites W2171778773 @default.
• W2014067266 doi "https://doi.org/10.1016/j.jsb.2013.09.010" @default.
• W2014067266 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/24060989" @default.
• W2014067266 hasPublicationYear "2013" @default.
• W2014067266 type Work @default.
• W2014067266 sameAs 2014067266 @default.
• W2014067266 citedByCount "18" @default.
• W2014067266 countsByYear W20140672662014 @default.
• W2014067266 countsByYear W20140672662015 @default.
• W2014067266 countsByYear W20140672662016 @default.
• W2014067266 countsByYear W20140672662017 @default.
• W2014067266 countsByYear W20140672662018 @default.
• W2014067266 countsByYear W20140672662019 @default.
• W2014067266 countsByYear W20140672662021 @default.
• W2014067266 countsByYear W20140672662022 @default.
• W2014067266 crossrefType "journal-article" @default.
• W2014067266 hasAuthorship W2014067266A5050082458 @default.
• W2014067266 hasAuthorship W2014067266A5067658311 @default.
• W2014067266 hasAuthorship W2014067266A5073919810 @default.
• W2014067266 hasBestOaLocation W20140672662 @default.
• W2014067266 hasConcept C109772839 @default.
• W2014067266 hasConcept C11413529 @default.
• W2014067266 hasConcept C117896860 @default.
• W2014067266 hasConcept C121332964 @default.
• W2014067266 hasConcept C121684516 @default.
• W2014067266 hasConcept C145108525 @default.
• W2014067266 hasConcept C154945302 @default.
• W2014067266 hasConcept C173608175 @default.
• W2014067266 hasConcept C18766215 @default.
• W2014067266 hasConcept C18945957 @default.
• W2014067266 hasConcept C21442007 @default.
• W2014067266 hasConcept C2778119891 @default.
• W2014067266 hasConcept C2779851693 @default.
• W2014067266 hasConcept C41008148 @default.
• W2014067266 hasConcept C459310 @default.
• W2014067266 hasConcept C54170458 @default.
• W2014067266 hasConcept C66629338 @default.
• W2014067266 hasConcept C74650414 @default.
• W2014067266 hasConcept C75172450 @default.
• W2014067266 hasConcept C86111242 @default.
• W2014067266 hasConceptScore W2014067266C109772839 @default.
• W2014067266 hasConceptScore W2014067266C11413529 @default.
• W2014067266 hasConceptScore W2014067266C117896860 @default.
• W2014067266 hasConceptScore W2014067266C121332964 @default.
• W2014067266 hasConceptScore W2014067266C121684516 @default.
• W2014067266 hasConceptScore W2014067266C145108525 @default.
• W2014067266 hasConceptScore W2014067266C154945302 @default.
• W2014067266 hasConceptScore W2014067266C173608175 @default.
• W2014067266 hasConceptScore W2014067266C18766215 @default.
• W2014067266 hasConceptScore W2014067266C18945957 @default.
• W2014067266 hasConceptScore W2014067266C21442007 @default.
• W2014067266 hasConceptScore W2014067266C2778119891 @default.
• W2014067266 hasConceptScore W2014067266C2779851693 @default.
• W2014067266 hasConceptScore W2014067266C41008148 @default.
• W2014067266 hasConceptScore W2014067266C459310 @default.
• W2014067266 hasConceptScore W2014067266C54170458 @default.
• W2014067266 hasConceptScore W2014067266C66629338 @default.
• W2014067266 hasConceptScore W2014067266C74650414 @default.
• W2014067266 hasConceptScore W2014067266C75172450 @default.
• W2014067266 hasConceptScore W2014067266C86111242 @default.
• W2014067266 hasIssue "2" @default.
• W2014067266 hasLocation W20140672661 @default.
• W2014067266 hasLocation W20140672662 @default.

• next