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• W2014901870 abstract "Disease resistance (R) genes from different Rosaceae species have been identified by map-based cloning for resistance breeding. However, there are few reports describing the pattern of R-gene evolution in Rosaceae species because several Rosaceae genome sequences have only recently become available.Since most disease resistance genes encode NBS-LRR proteins, we performed a systematic genome-wide survey of NBS-LRR genes between five Rosaceae species, namely Fragaria vesca (strawberry), Malus × domestica (apple), Pyrus bretschneideri (pear), Prunus persica (peach) and Prunus mume (mei) which contained 144, 748, 469, 354 and 352 NBS-LRR genes, respectively. A high proportion of multi-genes and similar Ks peaks (Ks = 0.1- 0.2) of gene families in the four woody genomes were detected. A total of 385 species-specific duplicate clades were observed in the phylogenetic tree constructed using all 2067 NBS-LRR genes. High percentages of NBS-LRR genes derived from species-specific duplication were found among the five genomes (61.81% in strawberry, 66.04% in apple, 48.61% in pear, 37.01% in peach and 40.05% in mei). Furthermore, the Ks and Ka/Ks values of TIR-NBS-LRR genes (TNLs) were significantly greater than those of non-TIR-NBS-LRR genes (non-TNLs), and most of the NBS-LRRs had Ka/Ks ratios less than 1, suggesting that they were evolving under a subfunctionalization model driven by purifying selection.Our results indicate that recent duplications played an important role in the evolution of NBS-LRR genes in the four woody perennial Rosaceae species. Based on the phylogenetic tree produced, it could be inferred that species-specific duplication has mainly contributed to the expansion of NBS-LRR genes in the five Rosaceae species. In addition, the Ks and Ka/Ks ratios suggest that the rapidly evolved TNLs have different evolutionary patterns to adapt to different pathogens compared with non-TNL resistant genes." @default.
• W2014901870 created "2016-06-24" @default.
• W2014901870 creator A5000304725 @default.
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• W2014901870 creator A5037196765 @default.
• W2014901870 creator A5070368345 @default.
• W2014901870 date "2015-02-14" @default.
• W2014901870 modified "2023-10-07" @default.
• W2014901870 title "Species-specific duplications driving the recent expansion of NBS-LRR genes in five Rosaceae species" @default.
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• W2014901870 doi "https://doi.org/10.1186/s12864-015-1291-0" @default.
• W2014901870 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4336698" @default.
• W2014901870 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25759136" @default.
• W2014901870 hasPublicationYear "2015" @default.
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