FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2015702272> ?p ?o ?g. }

• W2015702272 endingPage "2563" @default.
• W2015702272 startingPage "2554" @default.
• W2015702272 abstract "Understanding collective motions in protein crystals is likely to furnish insight into functional protein dynamics and will improve models for refinement against diffraction data. Here, four 10 ns molecular dynamics simulations of crystalline Staphylococcal nuclease are reported and analyzed in terms of fluctuations and correlations in atomic motion. The simulation-derived fluctuations strongly correlate with, but are slightly higher than, the values derived from the experimental B-factors. Approximately 70% of the atomic fluctuations are due to internal protein motion. For 65% of the protein atoms the internal fluctuations converge on the nanosecond timescale. Convergence is much slower for the elements of the interatomic displacement correlation matrix — of these, >80% converge within 1 ns for interatomic distances ≲6 Å, but only 10% for separations ≃12 Å. Those collective motions that converged on the nanosecond timescale involve mostly correlations within the β-barrel or between α-helices of the protein. The R-factor with the experimental x-ray diffuse scattering for the crystal, which is determined by the displacement variance-covariance matrix, decreases to 8% after 10 ns simulation. Both the number of converged correlation matrix elements and the R-factor depend logarithmically on time, consistent with a model in which the number of energy minima sampled depends exponentially on the maximum energy barrier crossed. The logarithmic dependence is also extrapolated to predict a convergence time for the whole variance-covariance matrix of ∼1 μs." @default.
• W2015702272 created "2016-06-24" @default.
• W2015702272 creator A5012280013 @default.
• W2015702272 creator A5018366869 @default.
• W2015702272 date "2005-04-01" @default.
• W2015702272 modified "2023-10-16" @default.
• W2015702272 title "Fluctuations and Correlations in Crystalline Protein Dynamics: A Simulation Analysis of Staphylococcal Nuclease" @default.
• W2015702272 cites W1966002028 @default.
• W2015702272 cites W1970804623 @default.
• W2015702272 cites W1975836332 @default.
• W2015702272 cites W1976499671 @default.
• W2015702272 cites W1977457371 @default.
• W2015702272 cites W1978498560 @default.
• W2015702272 cites W1982705873 @default.
• W2015702272 cites W1984965754 @default.
• W2015702272 cites W1991794210 @default.
• W2015702272 cites W1997145576 @default.
• W2015702272 cites W1997972388 @default.
• W2015702272 cites W2003488365 @default.
• W2015702272 cites W2010200494 @default.
• W2015702272 cites W2021646539 @default.
• W2015702272 cites W2021759185 @default.
• W2015702272 cites W2022946154 @default.
• W2015702272 cites W2024225780 @default.
• W2015702272 cites W2027408247 @default.
• W2015702272 cites W2033885033 @default.
• W2015702272 cites W2035687084 @default.
• W2015702272 cites W2040778983 @default.
• W2015702272 cites W2046923117 @default.
• W2015702272 cites W2055662245 @default.
• W2015702272 cites W2069777230 @default.
• W2015702272 cites W2072593380 @default.
• W2015702272 cites W2074756868 @default.
• W2015702272 cites W2076599706 @default.
• W2015702272 cites W2080071483 @default.
• W2015702272 cites W2080664920 @default.
• W2015702272 cites W2084584451 @default.
• W2015702272 cites W2094194615 @default.
• W2015702272 cites W2094795801 @default.
• W2015702272 cites W2101017457 @default.
• W2015702272 cites W2108596293 @default.
• W2015702272 cites W2112200653 @default.
• W2015702272 cites W2128107740 @default.
• W2015702272 cites W2130479394 @default.
• W2015702272 cites W2132589721 @default.
• W2015702272 cites W2146462263 @default.
• W2015702272 cites W2147936776 @default.
• W2015702272 cites W2157271776 @default.
• W2015702272 cites W2160451368 @default.
• W2015702272 cites W2162166182 @default.
• W2015702272 cites W2167279962 @default.
• W2015702272 cites W2171190723 @default.
• W2015702272 cites W3162695787 @default.
• W2015702272 cites W4244442010 @default.
• W2015702272 doi "https://doi.org/10.1529/biophysj.104.056101" @default.
• W2015702272 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/1305352" @default.
• W2015702272 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/15681654" @default.
• W2015702272 hasPublicationYear "2005" @default.
• W2015702272 type Work @default.
• W2015702272 sameAs 2015702272 @default.
• W2015702272 citedByCount "78" @default.
• W2015702272 countsByYear W20157022722012 @default.
• W2015702272 countsByYear W20157022722013 @default.
• W2015702272 countsByYear W20157022722014 @default.
• W2015702272 countsByYear W20157022722015 @default.
• W2015702272 countsByYear W20157022722016 @default.
• W2015702272 countsByYear W20157022722017 @default.
• W2015702272 countsByYear W20157022722018 @default.
• W2015702272 countsByYear W20157022722019 @default.
• W2015702272 countsByYear W20157022722020 @default.
• W2015702272 countsByYear W20157022722021 @default.
• W2015702272 countsByYear W20157022722022 @default.
• W2015702272 countsByYear W20157022722023 @default.
• W2015702272 crossrefType "journal-article" @default.
• W2015702272 hasAuthorship W2015702272A5012280013 @default.
• W2015702272 hasAuthorship W2015702272A5018366869 @default.
• W2015702272 hasBestOaLocation W20157022721 @default.
• W2015702272 hasConcept C105795698 @default.
• W2015702272 hasConcept C106487976 @default.
• W2015702272 hasConcept C121332964 @default.
• W2015702272 hasConcept C121864883 @default.
• W2015702272 hasConcept C134306372 @default.
• W2015702272 hasConcept C185142706 @default.
• W2015702272 hasConcept C185592680 @default.
• W2015702272 hasConcept C186633575 @default.
• W2015702272 hasConcept C207467116 @default.
• W2015702272 hasConcept C2524010 @default.
• W2015702272 hasConcept C26065003 @default.
• W2015702272 hasConcept C26873012 @default.
• W2015702272 hasConcept C33923547 @default.
• W2015702272 hasConcept C41999313 @default.
• W2015702272 hasConcept C43617362 @default.
• W2015702272 hasConcept C59593255 @default.
• W2015702272 hasConcept C62520636 @default.
• W2015702272 hasConceptScore W2015702272C105795698 @default.
• W2015702272 hasConceptScore W2015702272C106487976 @default.
• W2015702272 hasConceptScore W2015702272C121332964 @default.
• W2015702272 hasConceptScore W2015702272C121864883 @default.

• next