FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2019331379> ?p ?o ?g. }

• W2019331379 endingPage "e76704" @default.
• W2019331379 startingPage "e76704" @default.
• W2019331379 abstract "Flavobacteria are important members of aquatic and terrestrial bacterial communities, displaying extreme variations in lifestyle, geographical distribution and genome size. They are ubiquitous in soil, but are often strongly enriched in the rhizosphere and phyllosphere of plants. In this study, we compared the genome of a root-associated Flavobacterium that we recently isolated, physiologically characterized and sequenced, to 14 additional Flavobacterium genomes, in order to pinpoint characteristics associated with its high abundance in the rhizosphere. Interestingly, flavobacterial genomes vary in size by approximately two-fold, with terrestrial isolates having predominantly larger genomes than those from aquatic environments. Comparative functional gene analysis revealed that terrestrial and aquatic Flavobacteria generally segregated into two distinct clades. Members of the aquatic clade had a higher ratio of peptide and protein utilization genes, whereas members of the terrestrial clade were characterized by a significantly higher abundance and diversity of genes involved in metabolism of carbohydrates such as xylose, arabinose and pectin. Interestingly, genes encoding glycoside hydrolase (GH) families GH78 and GH106, responsible for rhamnogalacturonan utilization (exclusively associated with terrestrial plant hemicelluloses), were only present in terrestrial clade genomes, suggesting adaptation of the terrestrial strains to plant-related carbohydrate metabolism. The Peptidase/GH ratio of aquatic clade Flavobacteria was significantly higher than that of terrestrial strains (1.7±0.7 and 9.7±4.7, respectively), supporting the concept that this relation can be used to infer Flavobacterium lifestyles. Collectively, our research suggests that terrestrial Flavobacteria are highly adapted to plant carbohydrate metabolism, which appears to be a key to their profusion in plant environments." @default.
• W2019331379 created "2016-06-24" @default.
• W2019331379 creator A5022178928 @default.
• W2019331379 creator A5038431821 @default.
• W2019331379 creator A5044560517 @default.
• W2019331379 creator A5051746008 @default.
• W2019331379 date "2013-09-26" @default.
• W2019331379 modified "2023-09-27" @default.
• W2019331379 title "Comparative Genomic Analysis Indicates that Niche Adaptation of Terrestrial Flavobacteria Is Strongly Linked to Plant Glycan Metabolism" @default.
• W2019331379 cites W1491316965 @default.
• W2019331379 cites W1519266993 @default.
• W2019331379 cites W1547460291 @default.
• W2019331379 cites W1580009952 @default.
• W2019331379 cites W1965874164 @default.
• W2019331379 cites W1966998969 @default.
• W2019331379 cites W1967698446 @default.
• W2019331379 cites W1973831267 @default.
• W2019331379 cites W1983866431 @default.
• W2019331379 cites W1984787867 @default.
• W2019331379 cites W1989177177 @default.
• W2019331379 cites W1993602109 @default.
• W2019331379 cites W1997717967 @default.
• W2019331379 cites W2009393104 @default.
• W2019331379 cites W2010027815 @default.
• W2019331379 cites W2012671673 @default.
• W2019331379 cites W2021217122 @default.
• W2019331379 cites W2021758123 @default.
• W2019331379 cites W2030498531 @default.
• W2019331379 cites W2034741958 @default.
• W2019331379 cites W2037002356 @default.
• W2019331379 cites W2042318877 @default.
• W2019331379 cites W2055455922 @default.
• W2019331379 cites W2055590087 @default.
• W2019331379 cites W2058118623 @default.
• W2019331379 cites W2074202503 @default.
• W2019331379 cites W2074237851 @default.
• W2019331379 cites W2082910737 @default.
• W2019331379 cites W2093666160 @default.
• W2019331379 cites W2097159477 @default.
• W2019331379 cites W2099146272 @default.
• W2019331379 cites W2100450322 @default.
• W2019331379 cites W2100886853 @default.
• W2019331379 cites W2101444368 @default.
• W2019331379 cites W2102707846 @default.
• W2019331379 cites W2103539617 @default.
• W2019331379 cites W2103966275 @default.
• W2019331379 cites W2104895649 @default.
• W2019331379 cites W2108929776 @default.
• W2019331379 cites W2109729627 @default.
• W2019331379 cites W2113684891 @default.
• W2019331379 cites W2119045984 @default.
• W2019331379 cites W2126524398 @default.
• W2019331379 cites W2131561295 @default.
• W2019331379 cites W2132632499 @default.
• W2019331379 cites W2136128064 @default.
• W2019331379 cites W2137526347 @default.
• W2019331379 cites W2145151319 @default.
• W2019331379 cites W2149560398 @default.
• W2019331379 cites W2155858890 @default.
• W2019331379 cites W2159441530 @default.
• W2019331379 cites W2163195450 @default.
• W2019331379 cites W2163627198 @default.
• W2019331379 cites W2164154943 @default.
• W2019331379 cites W2164451216 @default.
• W2019331379 cites W2164641356 @default.
• W2019331379 cites W2171184688 @default.
• W2019331379 cites W4251292433 @default.
• W2019331379 doi "https://doi.org/10.1371/journal.pone.0076704" @default.
• W2019331379 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3887149" @default.
• W2019331379 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/24086761" @default.
• W2019331379 hasPublicationYear "2013" @default.
• W2019331379 type Work @default.
• W2019331379 sameAs 2019331379 @default.
• W2019331379 citedByCount "70" @default.
• W2019331379 countsByYear W20193313792014 @default.
• W2019331379 countsByYear W20193313792015 @default.
• W2019331379 countsByYear W20193313792016 @default.
• W2019331379 countsByYear W20193313792017 @default.
• W2019331379 countsByYear W20193313792018 @default.
• W2019331379 countsByYear W20193313792019 @default.
• W2019331379 countsByYear W20193313792020 @default.
• W2019331379 countsByYear W20193313792021 @default.
• W2019331379 countsByYear W20193313792022 @default.
• W2019331379 countsByYear W20193313792023 @default.
• W2019331379 crossrefType "journal-article" @default.
• W2019331379 hasAuthorship W2019331379A5022178928 @default.
• W2019331379 hasAuthorship W2019331379A5038431821 @default.
• W2019331379 hasAuthorship W2019331379A5044560517 @default.
• W2019331379 hasAuthorship W2019331379A5051746008 @default.
• W2019331379 hasBestOaLocation W20193313791 @default.
• W2019331379 hasConcept C104317684 @default.
• W2019331379 hasConcept C105176652 @default.
• W2019331379 hasConcept C12949176 @default.
• W2019331379 hasConcept C141231307 @default.
• W2019331379 hasConcept C18903297 @default.
• W2019331379 hasConcept C189206191 @default.
• W2019331379 hasConcept C2778106697 @default.
• W2019331379 hasConcept C2781463711 @default.

• next