FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2020006618> ?p ?o ?g. }

• W2020006618 abstract "Next generation sequencing technology has allowed efficient production of draft genomes for many organisms of interest. However, most draft genomes are just collections of independent contigs, whose relative positions and orientations along the genome being sequenced are unknown. Although several tools have been developed to order and orient the contigs of draft genomes, more accurate tools are still needed.In this study, we present a novel reference-based contig assembly (or scaffolding) tool, named as CAR, that can efficiently and more accurately order and orient the contigs of a prokaryotic draft genome based on a reference genome of a related organism. Given a set of contigs in multi-FASTA format and a reference genome in FASTA format, CAR can output a list of scaffolds, each of which is a set of ordered and oriented contigs. For validation, we have tested CAR on a real dataset composed of several prokaryotic genomes and also compared its performance with several other reference-based contig assembly tools. Consequently, our experimental results have shown that CAR indeed performs better than all these other reference-based contig assembly tools in terms of sensitivity, precision and genome coverage.CAR serves as an efficient tool that can more accurately order and orient the contigs of a prokaryotic draft genome based on a reference genome. The web server of CAR is freely available at http://genome.cs.nthu.edu.tw/CAR/ and its stand-alone program can also be downloaded from the same website." @default.
• W2020006618 created "2016-06-24" @default.
• W2020006618 creator A5045085437 @default.
• W2020006618 creator A5051154830 @default.
• W2020006618 creator A5066301303 @default.
• W2020006618 creator A5077745457 @default.
• W2020006618 date "2014-11-28" @default.
• W2020006618 modified "2023-10-06" @default.
• W2020006618 title "CAR: contig assembly of prokaryotic draft genomes using rearrangements" @default.
• W2020006618 cites W1596946737 @default.
• W2020006618 cites W1970995855 @default.
• W2020006618 cites W1975922463 @default.
• W2020006618 cites W1993361911 @default.
• W2020006618 cites W2005542405 @default.
• W2020006618 cites W2009704021 @default.
• W2020006618 cites W2030259061 @default.
• W2020006618 cites W2083215220 @default.
• W2020006618 cites W2096375646 @default.
• W2020006618 cites W2107233609 @default.
• W2020006618 cites W2107282968 @default.
• W2020006618 cites W2113035810 @default.
• W2020006618 cites W2118286674 @default.
• W2020006618 cites W2129744420 @default.
• W2020006618 cites W2137686109 @default.
• W2020006618 cites W2146842681 @default.
• W2020006618 cites W2155064619 @default.
• W2020006618 cites W2165336044 @default.
• W2020006618 cites W2168200296 @default.
• W2020006618 cites W2170525352 @default.
• W2020006618 cites W2171531867 @default.
• W2020006618 cites W4213205621 @default.
• W2020006618 doi "https://doi.org/10.1186/s12859-014-0381-3" @default.
• W2020006618 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4253983" @default.
• W2020006618 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25431302" @default.
• W2020006618 hasPublicationYear "2014" @default.
• W2020006618 type Work @default.
• W2020006618 sameAs 2020006618 @default.
• W2020006618 citedByCount "35" @default.
• W2020006618 countsByYear W20200066182015 @default.
• W2020006618 countsByYear W20200066182016 @default.
• W2020006618 countsByYear W20200066182017 @default.
• W2020006618 countsByYear W20200066182018 @default.
• W2020006618 countsByYear W20200066182019 @default.
• W2020006618 countsByYear W20200066182020 @default.
• W2020006618 countsByYear W20200066182021 @default.
• W2020006618 countsByYear W20200066182022 @default.
• W2020006618 countsByYear W20200066182023 @default.
• W2020006618 crossrefType "journal-article" @default.
• W2020006618 hasAuthorship W2020006618A5045085437 @default.
• W2020006618 hasAuthorship W2020006618A5051154830 @default.
• W2020006618 hasAuthorship W2020006618A5066301303 @default.
• W2020006618 hasAuthorship W2020006618A5077745457 @default.
• W2020006618 hasBestOaLocation W20200066181 @default.
• W2020006618 hasConcept C104317684 @default.
• W2020006618 hasConcept C141231307 @default.
• W2020006618 hasConcept C150194340 @default.
• W2020006618 hasConcept C162317418 @default.
• W2020006618 hasConcept C177264268 @default.
• W2020006618 hasConcept C18949551 @default.
• W2020006618 hasConcept C192953774 @default.
• W2020006618 hasConcept C199360897 @default.
• W2020006618 hasConcept C41008148 @default.
• W2020006618 hasConcept C54355233 @default.
• W2020006618 hasConcept C59582021 @default.
• W2020006618 hasConcept C70721500 @default.
• W2020006618 hasConcept C86803240 @default.
• W2020006618 hasConceptScore W2020006618C104317684 @default.
• W2020006618 hasConceptScore W2020006618C141231307 @default.
• W2020006618 hasConceptScore W2020006618C150194340 @default.
• W2020006618 hasConceptScore W2020006618C162317418 @default.
• W2020006618 hasConceptScore W2020006618C177264268 @default.
• W2020006618 hasConceptScore W2020006618C18949551 @default.
• W2020006618 hasConceptScore W2020006618C192953774 @default.
• W2020006618 hasConceptScore W2020006618C199360897 @default.
• W2020006618 hasConceptScore W2020006618C41008148 @default.
• W2020006618 hasConceptScore W2020006618C54355233 @default.
• W2020006618 hasConceptScore W2020006618C59582021 @default.
• W2020006618 hasConceptScore W2020006618C70721500 @default.
• W2020006618 hasConceptScore W2020006618C86803240 @default.
• W2020006618 hasIssue "1" @default.
• W2020006618 hasLocation W20200066181 @default.
• W2020006618 hasLocation W20200066182 @default.
• W2020006618 hasLocation W20200066183 @default.
• W2020006618 hasOpenAccess W2020006618 @default.
• W2020006618 hasPrimaryLocation W20200066181 @default.
• W2020006618 hasRelatedWork W1975465622 @default.
• W2020006618 hasRelatedWork W2043621752 @default.
• W2020006618 hasRelatedWork W2079322808 @default.
• W2020006618 hasRelatedWork W2779945812 @default.
• W2020006618 hasRelatedWork W2897233545 @default.
• W2020006618 hasRelatedWork W2925048800 @default.
• W2020006618 hasRelatedWork W2949294873 @default.
• W2020006618 hasRelatedWork W2981615389 @default.
• W2020006618 hasRelatedWork W4210830088 @default.
• W2020006618 hasRelatedWork W4283384467 @default.
• W2020006618 hasVolume "15" @default.
• W2020006618 isParatext "false" @default.
• W2020006618 isRetracted "false" @default.
• W2020006618 magId "2020006618" @default.
• W2020006618 workType "article" @default.