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• W2023605101 abstract "The Biological Magnetic Resonance Data Bank contains NMR chemical shift depositions for 132 RNAs and RNA-containing complexes. We have analyzed the (1)H NMR chemical shifts reported for non-exchangeable protons of residues that reside within A-form helical regions of these RNAs. The analysis focused on the central base pair within a stretch of three adjacent base pairs (BP triplets), and included both Watson-Crick (WC; G:C, A:U) and G:U wobble pairs. Chemical shift values were included for all 4(3) possible WC-BP triplets, as well as 137 additional triplets that contain one or more G:U wobbles. Sequence-dependent chemical shift correlations were identified, including correlations involving terminating base pairs within the triplets and canonical and non-canonical structures adjacent to the BP triplets (i.e. bulges, loops, WC and non-WC BPs), despite the fact that the NMR data were obtained under different conditions of pH, buffer, ionic strength, and temperature. A computer program (RNAShifts) was developed that enables convenient comparison of RNA (1)H NMR assignments with database predictions, which should facilitate future signal assignment/validation efforts and enable rapid identification of non-canonical RNA structures and RNA-ligand/protein interaction sites." @default.
• W2023605101 created "2016-06-24" @default.
• W2023605101 creator A5002027818 @default.
• W2023605101 creator A5023009930 @default.
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• W2023605101 date "2012-11-23" @default.
• W2023605101 modified "2023-10-16" @default.
• W2023605101 title "Database proton NMR chemical shifts for RNA signal assignment and validation" @default.
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• W2023605101 doi "https://doi.org/10.1007/s10858-012-9683-9" @default.
• W2023605101 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3555346" @default.
• W2023605101 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23180050" @default.
• W2023605101 hasPublicationYear "2012" @default.
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