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• W2024141588 abstract "The modes of DNA recognition by beta-sheets are analyzed by using the known crystal and solution three-dimensional structures of DNA-protein complexes. Close fitting of the protein surface and the DNA surface determines the binding geometry. Interaction takes place so that essentially the N-to-C direction of the beta-strands either follows or crosses the DNA groove. Upon following the major groove a two-stranded antiparallel beta-sheet dives into the groove and contacts DNA bases with its convex side facing the DNA, while upon following the minor groove, it binds around the sugar-phosphate backbones, with its opposite concave side shielding the DNA. In order for the beta-strands crossing the minor groove to interact with the DNA, the dinucleotide steps need to almost totally helically untwist and roll around major groove. The beta-sheet, on the other hand, needs to adopt a concave curvature on the binding surface in the direction that follows the DNA minor groove, and a convex surface in the direction that bridges the sugar-phosphate backbones across the groove. The result is to produce a hyperbolic paraboloidal DNA-binding surface." @default.
• W2024141588 created "2016-06-24" @default.
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• W2024141588 date "1997-01-01" @default.
• W2024141588 modified "2023-10-03" @default.
• W2024141588 title "DNA recognition by β-sheets" @default.
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• W2024141588 doi "https://doi.org/10.1002/(sici)1097-0282(1997)44:4<335::aid-bip3>3.0.co;2-r" @default.
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