FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2033362609> ?p ?o ?g. }

• W2033362609 abstract "The chloroplast genome is important for plant development and plant evolution. Nelumbo nucifera is one member of relict plants surviving from the late Cretaceous. Recently, a new sequencing platform PacBio RS II, known as `SMRT (Single Molecule, Real-Time) sequencing’, has been developed. Using the SMRT sequencing to investigate the chloroplast genome of N. nucifera will help to elucidate the plastid evolution of basal eudicots. The sizes of the de novo assembled complete chloroplast genome of N. nucifera were 163,307 bp, 163,747 bp and 163,600 bp with average depths of coverage of 7×, 712× and 105× sequenced by Sanger, Illumina MiSeq and PacBio RS II, respectively. The precise chloroplast genome of N. nucifera was obtained from PacBio RS II data proofread by Illumina MiSeq reads, with a quadripartite structure containing a large single copy region (91,846 bp) and a small single copy region (19,626 bp) separated by two inverted repeat regions (26,064 bp). The genome contains 113 different genes, including four distinct rRNAs, 30 distinct tRNAs and 79 distinct peptide-coding genes. A phylogenetic analysis of 133 taxa from 56 orders indicated that Nelumbo with an age of 177 million years is a sister clade to Platanus, which belongs to the basal eudicots. Basal eudicots began to emerge during the early Jurassic with estimated divergence times at 197 million years using MCMCTree. IR expansions/contractions within the basal eudicots seem to have occurred independently. Because of long reads and lack of bias in coverage of AT-rich regions, PacBio RS II showed a great promise for highly accurate `finished’ genomes, especially for a de novo assembly of genomes. N. nucifera is one member of basal eudicots, however, evolutionary analyses of IR structural variations of N. nucifera and other basal eudicots suggested that IR expansions/contractions occurred independently in these basal eudicots or were caused by independent insertions and deletions. The precise chloroplast genome of N. nucifera will present new information for structural variation of chloroplast genomes and provide new insight into the evolution of basal eudicots at the primary sequence and structural level." @default.
• W2033362609 created "2016-06-24" @default.
• W2033362609 creator A5024077116 @default.
• W2033362609 creator A5044120877 @default.
• W2033362609 creator A5049430106 @default.
• W2033362609 creator A5057396658 @default.
• W2033362609 creator A5068027895 @default.
• W2033362609 creator A5074494657 @default.
• W2033362609 creator A5078580398 @default.
• W2033362609 creator A5090639535 @default.
• W2033362609 date "2014-11-19" @default.
• W2033362609 modified "2023-10-09" @default.
• W2033362609 title "A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots" @default.
• W2033362609 cites W1502417695 @default.
• W2033362609 cites W1664439142 @default.
• W2033362609 cites W1747464137 @default.
• W2033362609 cites W1964423359 @default.
• W2033362609 cites W1966044150 @default.
• W2033362609 cites W1973517918 @default.
• W2033362609 cites W1976449379 @default.
• W2033362609 cites W1977415869 @default.
• W2033362609 cites W1979855662 @default.
• W2033362609 cites W1983403167 @default.
• W2033362609 cites W1989042412 @default.
• W2033362609 cites W1991388324 @default.
• W2033362609 cites W1992077325 @default.
• W2033362609 cites W1997340531 @default.
• W2033362609 cites W2003674398 @default.
• W2033362609 cites W2004146712 @default.
• W2033362609 cites W2005634688 @default.
• W2033362609 cites W2006963344 @default.
• W2033362609 cites W2016893340 @default.
• W2033362609 cites W2021669074 @default.
• W2033362609 cites W2022316530 @default.
• W2033362609 cites W2022888930 @default.
• W2033362609 cites W2024462922 @default.
• W2033362609 cites W2028368593 @default.
• W2033362609 cites W2029195160 @default.
• W2033362609 cites W2033713984 @default.
• W2033362609 cites W2036628186 @default.
• W2033362609 cites W2039446206 @default.
• W2033362609 cites W2045992300 @default.
• W2033362609 cites W2049991017 @default.
• W2033362609 cites W2050270315 @default.
• W2033362609 cites W2052391759 @default.
• W2033362609 cites W2055771471 @default.
• W2033362609 cites W2060970547 @default.
• W2033362609 cites W2068426017 @default.
• W2033362609 cites W2073339973 @default.
• W2033362609 cites W2077320134 @default.
• W2033362609 cites W2082928585 @default.
• W2033362609 cites W2085874544 @default.
• W2033362609 cites W2088997851 @default.
• W2033362609 cites W2100878402 @default.
• W2033362609 cites W2101797035 @default.
• W2033362609 cites W2104302381 @default.
• W2033362609 cites W2108252494 @default.
• W2033362609 cites W2110188639 @default.
• W2033362609 cites W2110335151 @default.
• W2033362609 cites W2111439735 @default.
• W2033362609 cites W2114217421 @default.
• W2033362609 cites W2118504873 @default.
• W2033362609 cites W2118526609 @default.
• W2033362609 cites W2124344872 @default.
• W2033362609 cites W2124715997 @default.
• W2033362609 cites W2126132152 @default.
• W2033362609 cites W2127735379 @default.
• W2033362609 cites W2127847431 @default.
• W2033362609 cites W2131633033 @default.
• W2033362609 cites W2132632499 @default.
• W2033362609 cites W2132991670 @default.
• W2033362609 cites W2134107197 @default.
• W2033362609 cites W2136624241 @default.
• W2033362609 cites W2139229065 @default.
• W2033362609 cites W2139421741 @default.
• W2033362609 cites W2139771752 @default.
• W2033362609 cites W2140542364 @default.
• W2033362609 cites W2143183702 @default.
• W2033362609 cites W2145694091 @default.
• W2033362609 cites W2147096538 @default.
• W2033362609 cites W2147512035 @default.
• W2033362609 cites W2149096476 @default.
• W2033362609 cites W2150081252 @default.
• W2033362609 cites W2150475731 @default.
• W2033362609 cites W2155310681 @default.
• W2033362609 cites W2157888653 @default.
• W2033362609 cites W2159772205 @default.
• W2033362609 cites W2162055898 @default.
• W2033362609 cites W2162393839 @default.
• W2033362609 cites W2163336815 @default.
• W2033362609 cites W4230357098 @default.
• W2033362609 cites W4231539689 @default.
• W2033362609 cites W4234289204 @default.
• W2033362609 cites W4234655722 @default.
• W2033362609 cites W4245471709 @default.
• W2033362609 cites W4255466524 @default.
• W2033362609 doi "https://doi.org/10.1186/s12870-014-0289-0" @default.
• W2033362609 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/4245832" @default.
• W2033362609 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/25407166" @default.
• W2033362609 hasPublicationYear "2014" @default.

• next