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• W2034871972 endingPage "CIN.S5613" @default.
• W2034871972 startingPage "CIN.S5613" @default.
• W2034871972 abstract "Background While trying to integrate multiple data sets collected by different researchers, we noticed that the sample names were frequently entered inconsistently. Most of the variations appeared to involve punctuation, white space, or their absence, at the juncture between alphabetic and numeric portions of the cell line name. Results Reasoning that the variant names could be described in terms of mutations or deletions of character strings, we implemented a simple version of the Needleman-Wunsch global sequence alignment algorithm and applied it to the cell line names. All correct matches were found by this procedure. Incorrect matches only occured when a cell line was present in one data set but not in the other. The raw match scores tended to be substantially worse for the incorrect matches. Conclusions A simple application of the Needleman-Wunsch global sequence alignment algorithm provides a useful first pass at matching sample names from different data sets." @default.
• W2034871972 created "2016-06-24" @default.
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• W2034871972 date "2010-01-01" @default.
• W2034871972 modified "2023-09-27" @default.
• W2034871972 title "Blasted Cell Line Names" @default.
• W2034871972 cites W2055043387 @default.
• W2034871972 cites W2074231493 @default.
• W2034871972 doi "https://doi.org/10.4137/cin.s5613" @default.
• W2034871972 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/2978931" @default.
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• W2034871972 hasPublicationYear "2010" @default.
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