Matches in SemOpenAlex for { <https://semopenalex.org/work/W2040386650> ?p ?o ?g. }
- W2040386650 endingPage "216" @default.
- W2040386650 startingPage "197" @default.
- W2040386650 abstract "LTR retrotransposons constitute one of the most abundant classes of repetitive elements in eukaryotic genomes. In this paper, we present a new algorithm for detection of full-length LTR retrotransposons in genomic sequences. The algorithm identifies regions in a genomic sequence that show structural characteristics of LTR retrotransposons. Three key components distinguish our algorithm from that of current software — (i) a novel method that preprocesses the entire genomic sequence in linear time and produces high quality pairs of LTR candidates in run-time that is constant per pair, (ii) a thorough alignment-based evaluation of candidate pairs to ensure high quality prediction, and (iii) a robust parameter set encompassing both structural constraints and quality controls providing users with a high degree of flexibility. We implemented our algorithm into a software program called LTR_par, which can be run on both serial and parallel computers. Validation of our software against the yeast genome indicates superior results in both quality and performance when compared to existing software. Additional validations are presented on rice BACs and chimpanzee genome." @default.
- W2040386650 created "2016-06-24" @default.
- W2040386650 creator A5014307317 @default.
- W2040386650 creator A5074347913 @default.
- W2040386650 date "2006-04-01" @default.
- W2040386650 modified "2023-09-27" @default.
- W2040386650 title "EFFICIENT ALGORITHMS AND SOFTWARE FOR DETECTION OF FULL-LENGTH LTR RETROTRANSPOSONS" @default.
- W2040386650 cites W1490914592 @default.
- W2040386650 cites W1554644662 @default.
- W2040386650 cites W1689369637 @default.
- W2040386650 cites W1928279239 @default.
- W2040386650 cites W1953861638 @default.
- W2040386650 cites W1972691343 @default.
- W2040386650 cites W1981797537 @default.
- W2040386650 cites W2005877477 @default.
- W2040386650 cites W201532695 @default.
- W2040386650 cites W2022184660 @default.
- W2040386650 cites W2028334468 @default.
- W2040386650 cites W2035644750 @default.
- W2040386650 cites W2044251005 @default.
- W2040386650 cites W2055043387 @default.
- W2040386650 cites W2068448872 @default.
- W2040386650 cites W2074231493 @default.
- W2040386650 cites W2076092946 @default.
- W2040386650 cites W2079308685 @default.
- W2040386650 cites W2081612620 @default.
- W2040386650 cites W2105052778 @default.
- W2040386650 cites W2108336999 @default.
- W2040386650 cites W2109289454 @default.
- W2040386650 cites W2116628377 @default.
- W2040386650 cites W2122893781 @default.
- W2040386650 cites W2124281279 @default.
- W2040386650 cites W2127384606 @default.
- W2040386650 cites W2131487005 @default.
- W2040386650 cites W2146133538 @default.
- W2040386650 cites W2151899848 @default.
- W2040386650 cites W2158874082 @default.
- W2040386650 cites W2163960662 @default.
- W2040386650 cites W2168909179 @default.
- W2040386650 cites W2178316541 @default.
- W2040386650 cites W4250808921 @default.
- W2040386650 cites W938539187 @default.
- W2040386650 doi "https://doi.org/10.1142/s021972000600203x" @default.
- W2040386650 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/16819780" @default.
- W2040386650 hasPublicationYear "2006" @default.
- W2040386650 type Work @default.
- W2040386650 sameAs 2040386650 @default.
- W2040386650 citedByCount "36" @default.
- W2040386650 countsByYear W20403866502012 @default.
- W2040386650 countsByYear W20403866502013 @default.
- W2040386650 countsByYear W20403866502014 @default.
- W2040386650 countsByYear W20403866502016 @default.
- W2040386650 countsByYear W20403866502017 @default.
- W2040386650 countsByYear W20403866502018 @default.
- W2040386650 countsByYear W20403866502019 @default.
- W2040386650 countsByYear W20403866502022 @default.
- W2040386650 crossrefType "journal-article" @default.
- W2040386650 hasAuthorship W2040386650A5014307317 @default.
- W2040386650 hasAuthorship W2040386650A5074347913 @default.
- W2040386650 hasConcept C104317684 @default.
- W2040386650 hasConcept C11413529 @default.
- W2040386650 hasConcept C141231307 @default.
- W2040386650 hasConcept C199360897 @default.
- W2040386650 hasConcept C2777904410 @default.
- W2040386650 hasConcept C41008148 @default.
- W2040386650 hasConcept C4918238 @default.
- W2040386650 hasConcept C54355233 @default.
- W2040386650 hasConcept C7029365 @default.
- W2040386650 hasConcept C70721500 @default.
- W2040386650 hasConcept C86803240 @default.
- W2040386650 hasConceptScore W2040386650C104317684 @default.
- W2040386650 hasConceptScore W2040386650C11413529 @default.
- W2040386650 hasConceptScore W2040386650C141231307 @default.
- W2040386650 hasConceptScore W2040386650C199360897 @default.
- W2040386650 hasConceptScore W2040386650C2777904410 @default.
- W2040386650 hasConceptScore W2040386650C41008148 @default.
- W2040386650 hasConceptScore W2040386650C4918238 @default.
- W2040386650 hasConceptScore W2040386650C54355233 @default.
- W2040386650 hasConceptScore W2040386650C7029365 @default.
- W2040386650 hasConceptScore W2040386650C70721500 @default.
- W2040386650 hasConceptScore W2040386650C86803240 @default.
- W2040386650 hasIssue "02" @default.
- W2040386650 hasLocation W20403866501 @default.
- W2040386650 hasLocation W20403866502 @default.
- W2040386650 hasOpenAccess W2040386650 @default.
- W2040386650 hasPrimaryLocation W20403866501 @default.
- W2040386650 hasRelatedWork W1967352352 @default.
- W2040386650 hasRelatedWork W1971924113 @default.
- W2040386650 hasRelatedWork W2002532134 @default.
- W2040386650 hasRelatedWork W2035120673 @default.
- W2040386650 hasRelatedWork W2048756840 @default.
- W2040386650 hasRelatedWork W2094923272 @default.
- W2040386650 hasRelatedWork W2111743803 @default.
- W2040386650 hasRelatedWork W2112373845 @default.
- W2040386650 hasRelatedWork W2137282308 @default.
- W2040386650 hasRelatedWork W2599768688 @default.
- W2040386650 hasVolume "04" @default.
- W2040386650 isParatext "false" @default.