FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2044468405> ?p ?o ?g. }

• W2044468405 endingPage "154" @default.
• W2044468405 startingPage "145" @default.
• W2044468405 abstract "Torque teno sus virus 1 (TTSuV1) is a novel virus that has been found widely distributed in the swine population in recent years. Analysis of codon usage can reveal much about the molecular evolution of TTSuV1. In this study, synonymous codon usage patterns and the key determinants in the coding region of 29 available complete TTSuV1 genome sequences were examined. By calculating the nucleotide content and relative synonymous codon usage (RSCU) of TTSuV1 coding sequences, we found that the preferentially used codons were mostly those ending with A or C nucleotides; less-used codons were mostly codons ending with U or G nucleotides, and these were mainly affected by composition constraints. Although there was a variation in codon usage bias among different TTSuV1 genomes, the codon usage bias and GC content in the TTSuV1 coding region was lower, which was mainly determined by the base composition in the third codon position and the effective number of codons (ENC) value. Moreover, the results of correspondence analysis (COA) indicated that the codon usage patterns of TTSuV1 isolated from different countries varied greatly and had significant differences. In addition, Spearman's rank correlation analysis and an ENC plot revealed that apart from mutation pressure, which was critical in determining the codon usage pattern, other factors were involved in shaping the evolution of codon usage bias in TTSuV1, such as natural selection. Those results suggested that synonymous codon usage patterns of TTSuV1 genomes were the result of interaction between mutation pressure and natural selection. The information from this study not only provides important insights into the synonymous codon usage pattern of TTSuV1, but also helps to identify the main factors affecting codon usage by this virus." @default.
• W2044468405 created "2016-06-24" @default.
• W2044468405 creator A5012049169 @default.
• W2044468405 creator A5048692629 @default.
• W2044468405 creator A5054977436 @default.
• W2044468405 creator A5071074966 @default.
• W2044468405 creator A5086609429 @default.
• W2044468405 date "2012-09-26" @default.
• W2044468405 modified "2023-10-16" @default.
• W2044468405 title "Analysis of synonymous codon usage patterns in torque teno sus virus 1 (TTSuV1)" @default.
• W2044468405 cites W134991349 @default.
• W2044468405 cites W1500867939 @default.
• W2044468405 cites W1966773394 @default.
• W2044468405 cites W1977790594 @default.
• W2044468405 cites W1978198404 @default.
• W2044468405 cites W1981457711 @default.
• W2044468405 cites W1984855344 @default.
• W2044468405 cites W1986136768 @default.
• W2044468405 cites W1989529069 @default.
• W2044468405 cites W1991141629 @default.
• W2044468405 cites W1997395408 @default.
• W2044468405 cites W2004146038 @default.
• W2044468405 cites W2024528567 @default.
• W2044468405 cites W2027921494 @default.
• W2044468405 cites W2030886209 @default.
• W2044468405 cites W2032429123 @default.
• W2044468405 cites W2034984731 @default.
• W2044468405 cites W2038264706 @default.
• W2044468405 cites W2041799535 @default.
• W2044468405 cites W2042782470 @default.
• W2044468405 cites W2045503632 @default.
• W2044468405 cites W2050115910 @default.
• W2044468405 cites W2053162921 @default.
• W2044468405 cites W2070163065 @default.
• W2044468405 cites W2072038175 @default.
• W2044468405 cites W2072180124 @default.
• W2044468405 cites W2077887551 @default.
• W2044468405 cites W2080731394 @default.
• W2044468405 cites W2081747108 @default.
• W2044468405 cites W2082721921 @default.
• W2044468405 cites W2082850440 @default.
• W2044468405 cites W2083410104 @default.
• W2044468405 cites W2092907967 @default.
• W2044468405 cites W2095019100 @default.
• W2044468405 cites W2107070848 @default.
• W2044468405 cites W2109457499 @default.
• W2044468405 cites W2110515645 @default.
• W2044468405 cites W2118819589 @default.
• W2044468405 cites W2123702672 @default.
• W2044468405 cites W2133238953 @default.
• W2044468405 cites W2135747848 @default.
• W2044468405 cites W2149570901 @default.
• W2044468405 cites W2152812151 @default.
• W2044468405 cites W2154278477 @default.
• W2044468405 cites W2157130050 @default.
• W2044468405 cites W2161979007 @default.
• W2044468405 cites W2164200047 @default.
• W2044468405 cites W2164393923 @default.
• W2044468405 cites W2165707605 @default.
• W2044468405 cites W2165870073 @default.
• W2044468405 doi "https://doi.org/10.1007/s00705-012-1480-y" @default.
• W2044468405 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/7086873" @default.
• W2044468405 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23011310" @default.
• W2044468405 hasPublicationYear "2012" @default.
• W2044468405 type Work @default.
• W2044468405 sameAs 2044468405 @default.
• W2044468405 citedByCount "39" @default.
• W2044468405 countsByYear W20444684052013 @default.
• W2044468405 countsByYear W20444684052014 @default.
• W2044468405 countsByYear W20444684052015 @default.
• W2044468405 countsByYear W20444684052016 @default.
• W2044468405 countsByYear W20444684052017 @default.
• W2044468405 countsByYear W20444684052018 @default.
• W2044468405 countsByYear W20444684052019 @default.
• W2044468405 countsByYear W20444684052020 @default.
• W2044468405 countsByYear W20444684052021 @default.
• W2044468405 countsByYear W20444684052022 @default.
• W2044468405 countsByYear W20444684052023 @default.
• W2044468405 crossrefType "journal-article" @default.
• W2044468405 hasAuthorship W2044468405A5012049169 @default.
• W2044468405 hasAuthorship W2044468405A5048692629 @default.
• W2044468405 hasAuthorship W2044468405A5054977436 @default.
• W2044468405 hasAuthorship W2044468405A5071074966 @default.
• W2044468405 hasAuthorship W2044468405A5086609429 @default.
• W2044468405 hasBestOaLocation W20444684051 @default.
• W2044468405 hasConcept C104317684 @default.
• W2044468405 hasConcept C138025448 @default.
• W2044468405 hasConcept C141231307 @default.
• W2044468405 hasConcept C144024400 @default.
• W2044468405 hasConcept C149923435 @default.
• W2044468405 hasConcept C2908647359 @default.
• W2044468405 hasConcept C42251679 @default.
• W2044468405 hasConcept C54355233 @default.
• W2044468405 hasConcept C7386963 @default.
• W2044468405 hasConcept C75268714 @default.
• W2044468405 hasConcept C86803240 @default.
• W2044468405 hasConcept C87253356 @default.
• W2044468405 hasConcept C91779695 @default.

• next