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• W2045559503 abstract "We analyzed several features of five currently available δ-proteobacterial genomes, including two aerobic bacteria exhibiting predatory behavior and three anaerobic sulfate-reducing bacteria. The δ genomes are distinguished from other bacteria by several properties: ( i ) The δ genomes contain two “giant” S1 ribosomal protein genes in contrast to all other bacterial types, which encode a single or no S1; ( ii ) in most δ-proteobacterial genomes the major ribosomal protein (RP) gene cluster is near the replication terminus whereas most bacterial genomes place the major RP cluster near the origin of replication; ( iii ) the δ genomes possess the rare combination of discriminating asparaginyl and glutaminyl tRNA synthetase (AARS) together with the amido-transferase complex (Gat CAB) genes that modify Asp-tRNA Asn into Asn-tRNA Asn and Glu-tRNA Gln into Gln-tRNA Gln ; ( iv ) the TonB receptors and ferric siderophore receptors that facilitate uptake and removal of complex metals are common among δ genomes; ( v ) the anaerobic δ genomes encode multiple copies of the anaerobic detoxification protein rubrerythrin that can neutralize hydrogen peroxide; and ( vi ) σ 54 activators play a more important role in the δ genomes than in other bacteria. δ genomes have a plethora of enhancer binding proteins that respond to environmental and intracellular cues, often as part of two-component systems; ( vii ) δ genomes encode multiple copies of metallo-β-lactamase enzymes; ( viii ) a host of secretion proteins emphasizing SecA, SecB, and SecY may be especially useful in the predatory activities of Myxococcus xanthus ; ( ix ) δ proteobacteria drive many multiprotein machines in their periplasms and outer membrane, including chaperone-feeding machines, jets for slime secretion, and type IV pili. Bdellovibrio replicates in the periplasm of prey cells. The sulfate-reducing δ proteobacteria metabolize hydrogen and generate a proton gradient by electron transport. The predicted highly expressed genes from δ genomes reflect their different ecologies, metabolic strategies, and adaptations." @default.
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• W2045559503 date "2006-07-25" @default.
• W2045559503 modified "2023-10-14" @default.
• W2045559503 title "Distinguishing features of δ-proteobacterial genomes" @default.
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• W2045559503 doi "https://doi.org/10.1073/pnas.0604311103" @default.
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