FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2051736238> ?p ?o ?g. }

• W2051736238 endingPage "480" @default.
• W2051736238 startingPage "470" @default.
• W2051736238 abstract "Computational methods have been used in biology for sequence analysis (bioinformatics), all-atom simulation (molecular dynamics and quantum calculations), and more recently for modeling biological networks (systems biology). Of these three techniques, all-atom simulation is currently the most computationally demanding, in terms of compute load, communication speed, and memory load. Breakthroughs in electrostatic force calculation and dynamic load balancing have enabled molecular dynamics simulations of large biomolecular complexes. Here, we report simulation results for the ribosome, using approximately 2.64 million atoms, the largest all-atom biomolecular simulation published to date. Several other nano-scale systems with different numbers of atoms were studied to measure the performance of the NAMD molecular dynamics simulation program on the Los Alamos National Laboratory Q Machine. We demonstrate that multimillion atom systems represent a ‘sweet spot’ for the NAMD code on large supercomputers. NAMD displays an unprecedented 85% parallel scaling efficiency for the ribosome system on 1024 CPUs. We also review recent targeted molecular dynamics simulations of the ribosome that prove useful for studying conformational changes of this large biomolecular complex in atomic detail." @default.
• W2051736238 created "2016-06-24" @default.
• W2051736238 creator A5024203760 @default.
• W2051736238 creator A5052450940 @default.
• W2051736238 date "2007-03-01" @default.
• W2051736238 modified "2023-10-14" @default.
• W2051736238 title "High performance computing in biology: Multimillion atom simulations of nanoscale systems" @default.
• W2051736238 cites W1605166042 @default.
• W2051736238 cites W1959245158 @default.
• W2051736238 cites W1964651650 @default.
• W2051736238 cites W1966743338 @default.
• W2051736238 cites W1967493918 @default.
• W2051736238 cites W1969723894 @default.
• W2051736238 cites W1970900907 @default.
• W2051736238 cites W1975093638 @default.
• W2051736238 cites W1991074394 @default.
• W2051736238 cites W2000544785 @default.
• W2051736238 cites W2000829418 @default.
• W2051736238 cites W2000963503 @default.
• W2051736238 cites W2002767842 @default.
• W2051736238 cites W2003229373 @default.
• W2051736238 cites W2007763435 @default.
• W2051736238 cites W2014937690 @default.
• W2051736238 cites W2015558782 @default.
• W2051736238 cites W2017164460 @default.
• W2051736238 cites W2027821476 @default.
• W2051736238 cites W2029898642 @default.
• W2051736238 cites W2031536080 @default.
• W2051736238 cites W2032158520 @default.
• W2051736238 cites W2038908950 @default.
• W2051736238 cites W2039425860 @default.
• W2051736238 cites W2039951296 @default.
• W2051736238 cites W2053347459 @default.
• W2051736238 cites W2053431227 @default.
• W2051736238 cites W2056117284 @default.
• W2051736238 cites W2067174909 @default.
• W2051736238 cites W2070777040 @default.
• W2051736238 cites W2071740908 @default.
• W2051736238 cites W2075956091 @default.
• W2051736238 cites W2079199763 @default.
• W2051736238 cites W2093221728 @default.
• W2051736238 cites W2095911937 @default.
• W2051736238 cites W2101442650 @default.
• W2051736238 cites W2103815459 @default.
• W2051736238 cites W2105546584 @default.
• W2051736238 cites W2116493166 @default.
• W2051736238 cites W2116777154 @default.
• W2051736238 cites W2119966574 @default.
• W2051736238 cites W2124660391 @default.
• W2051736238 cites W2137206793 @default.
• W2051736238 cites W2137271838 @default.
• W2051736238 cites W2151925611 @default.
• W2051736238 cites W2156871002 @default.
• W2051736238 cites W2158314430 @default.
• W2051736238 cites W2160839662 @default.
• W2051736238 cites W2168909179 @default.
• W2051736238 cites W2171268876 @default.
• W2051736238 cites W4238826819 @default.
• W2051736238 cites W4243050008 @default.
• W2051736238 cites W84329380 @default.
• W2051736238 doi "https://doi.org/10.1016/j.jsb.2006.10.023" @default.
• W2051736238 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/1868470" @default.
• W2051736238 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/17187988" @default.
• W2051736238 hasPublicationYear "2007" @default.
• W2051736238 type Work @default.
• W2051736238 sameAs 2051736238 @default.
• W2051736238 citedByCount "166" @default.
• W2051736238 countsByYear W20517362382012 @default.
• W2051736238 countsByYear W20517362382013 @default.
• W2051736238 countsByYear W20517362382014 @default.
• W2051736238 countsByYear W20517362382015 @default.
• W2051736238 countsByYear W20517362382016 @default.
• W2051736238 countsByYear W20517362382017 @default.
• W2051736238 countsByYear W20517362382018 @default.
• W2051736238 countsByYear W20517362382019 @default.
• W2051736238 countsByYear W20517362382020 @default.
• W2051736238 countsByYear W20517362382021 @default.
• W2051736238 countsByYear W20517362382022 @default.
• W2051736238 countsByYear W20517362382023 @default.
• W2051736238 crossrefType "journal-article" @default.
• W2051736238 hasAuthorship W2051736238A5024203760 @default.
• W2051736238 hasAuthorship W2051736238A5052450940 @default.
• W2051736238 hasBestOaLocation W20517362382 @default.
• W2051736238 hasConcept C121332964 @default.
• W2051736238 hasConcept C121864883 @default.
• W2051736238 hasConcept C173608175 @default.
• W2051736238 hasConcept C2524010 @default.
• W2051736238 hasConcept C33923547 @default.
• W2051736238 hasConcept C41008148 @default.
• W2051736238 hasConcept C459310 @default.
• W2051736238 hasConcept C58312451 @default.
• W2051736238 hasConcept C59593255 @default.
• W2051736238 hasConcept C62520636 @default.
• W2051736238 hasConcept C99844830 @default.
• W2051736238 hasConceptScore W2051736238C121332964 @default.
• W2051736238 hasConceptScore W2051736238C121864883 @default.
• W2051736238 hasConceptScore W2051736238C173608175 @default.
• W2051736238 hasConceptScore W2051736238C2524010 @default.

• next