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• W2066081314 abstract "Dynamic visual exploration of detailed pathway information can help researchers digest and interpret complex mechanisms and genomic datasets. ChiBE is a free, open-source software tool for visualizing, querying, and analyzing human biological pathways in BioPAX format. The recently released version 2 can search for neighborhoods, paths between molecules, and common regulators/targets of molecules, on large integrated cellular networks in the Pathway Commons database as well as in local BioPAX models. Resulting networks can be automatically laid out for visualization using a graphically rich, process-centric notation. Profiling data from the cBioPortal for Cancer Genomics and expression data from the Gene Expression Omnibus can be overlaid on these networks. ChiBE’s new capabilities are organized around a genomics-oriented workflow and offer a unique comprehensive pathway analysis solution for genomics researchers. The software is freely available at http://code.google.com/p/chibe ." @default.
• W2066081314 created "2016-06-24" @default.
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• W2066081314 date "2014-01-01" @default.
• W2066081314 modified "2023-10-17" @default.
• W2066081314 title "Integrating biological pathways and genomic profiles with ChiBE 2" @default.
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• W2066081314 doi "https://doi.org/10.1186/1471-2164-15-642" @default.
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