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• W2066475544 abstract "A major problem in sequence alignments based on the standard dynamic programming method is that the optimal path does not necessarily yield the best equivalencing of residues assessed by structural or functional criteria. An algorithm is presented that finds suboptimal alignments of protein sequences by a simple modification to the standard dynamic programming method. The standard pairwise weight matrix elements are modified in order to penalize, but not eliminate, the equivalencing of residues obtained from previous alignments. The algorithm thereby yields a limited set of alternate alignments that can differ considerably from the optimal. The approach is benchmarked on the alignments of immunoglobulin domains. Without a prior knowledge of the optimal choice of gap penalty, one of the suboptimal alignments is shown to be more accurate than the optimal." @default.
• W2066475544 created "2016-06-24" @default.
• W2066475544 creator A5023619547 @default.
• W2066475544 creator A5068307947 @default.
• W2066475544 date "1991-06-01" @default.
• W2066475544 modified "2023-10-16" @default.
• W2066475544 title "A simple method to generate non-trivial alternate alignments of protein sequences" @default.
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• W2066475544 doi "https://doi.org/10.1016/0022-2836(91)90667-u" @default.
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