FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2068117645> ?p ?o ?g. }

• W2068117645 endingPage "2589" @default.
• W2068117645 startingPage "2580" @default.
• W2068117645 abstract "Motivation: Incorporation of selenocysteine (Sec) into proteins in response to UGA codons requires a cis-acting RNA structure, Sec insertion sequence (SECIS) element. Whereas SECIS elements in Escherichia coli are well characterized, a bacterial SECIS consensus structure is lacking. Results: We developed a bacterial SECIS consensus model, the key feature of which is a conserved guanosine in a small apical loop of the properly positioned structure. This consensus was used to build a computational tool, bSECISearch, for detection of bacterial SECIS elements and selenoprotein genes in sequence databases. The program identified 96.5% of known selenoprotein genes in completely sequenced bacterial genomes and predicted several new selenoprotein genes. Further analysis revealed that the size of bacterial selenoproteomes varied from 1 to 11 selenoproteins. Formate dehydrogenase was present in most selenoproteomes, often as the only selenoprotein family, whereas the occurrence of other selenoproteins was limited. The availability of the bacterial SECIS consensus and the tool for identification of these structures should help in correct annotation of selenoprotein genes and characterization of bacterial selenoproteomes. Availability: The web server interface is freely accessible to users at http://genomics.unl.edu/bSECISearch/ Contact: vgladyshev1@unl.edu Supplementary information: http://genomics.unl.edu/bSECISearch/supplement.html (includes detailed Methods and Figures S1–S3)." @default.
• W2068117645 created "2016-06-24" @default.
• W2068117645 creator A5010080171 @default.
• W2068117645 creator A5086664284 @default.
• W2068117645 date "2005-03-29" @default.
• W2068117645 modified "2023-10-03" @default.
• W2068117645 title "An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes" @default.
• W2068117645 cites W1499041920 @default.
• W2068117645 cites W1521051093 @default.
• W2068117645 cites W1537526904 @default.
• W2068117645 cites W1588301798 @default.
• W2068117645 cites W1975571675 @default.
• W2068117645 cites W1981268894 @default.
• W2068117645 cites W1982056379 @default.
• W2068117645 cites W2001701627 @default.
• W2068117645 cites W2003967338 @default.
• W2068117645 cites W2007603794 @default.
• W2068117645 cites W2011368877 @default.
• W2068117645 cites W2021607498 @default.
• W2068117645 cites W2023919498 @default.
• W2068117645 cites W2027933081 @default.
• W2068117645 cites W2031369629 @default.
• W2068117645 cites W2035564383 @default.
• W2068117645 cites W2048331099 @default.
• W2068117645 cites W2052100738 @default.
• W2068117645 cites W2052831012 @default.
• W2068117645 cites W2068448872 @default.
• W2068117645 cites W2093198875 @default.
• W2068117645 cites W2095423035 @default.
• W2068117645 cites W2096570384 @default.
• W2068117645 cites W2098890352 @default.
• W2068117645 cites W2107385823 @default.
• W2068117645 cites W2117310188 @default.
• W2068117645 cites W2118215239 @default.
• W2068117645 cites W2125858402 @default.
• W2068117645 cites W2168433858 @default.
• W2068117645 cites W4236236547 @default.
• W2068117645 cites W4241536314 @default.
• W2068117645 doi "https://doi.org/10.1093/bioinformatics/bti400" @default.
• W2068117645 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/15797911" @default.
• W2068117645 hasPublicationYear "2005" @default.
• W2068117645 type Work @default.
• W2068117645 sameAs 2068117645 @default.
• W2068117645 citedByCount "101" @default.
• W2068117645 countsByYear W20681176452012 @default.
• W2068117645 countsByYear W20681176452013 @default.
• W2068117645 countsByYear W20681176452014 @default.
• W2068117645 countsByYear W20681176452015 @default.
• W2068117645 countsByYear W20681176452016 @default.
• W2068117645 countsByYear W20681176452017 @default.
• W2068117645 countsByYear W20681176452018 @default.
• W2068117645 countsByYear W20681176452019 @default.
• W2068117645 countsByYear W20681176452020 @default.
• W2068117645 countsByYear W20681176452021 @default.
• W2068117645 countsByYear W20681176452022 @default.
• W2068117645 crossrefType "journal-article" @default.
• W2068117645 hasAuthorship W2068117645A5010080171 @default.
• W2068117645 hasAuthorship W2068117645A5086664284 @default.
• W2068117645 hasBestOaLocation W20681176451 @default.
• W2068117645 hasConcept C104317684 @default.
• W2068117645 hasConcept C141231307 @default.
• W2068117645 hasConcept C157887575 @default.
• W2068117645 hasConcept C181199279 @default.
• W2068117645 hasConcept C2776087148 @default.
• W2068117645 hasConcept C2776841403 @default.
• W2068117645 hasConcept C2778760513 @default.
• W2068117645 hasConcept C2779201268 @default.
• W2068117645 hasConcept C4918238 @default.
• W2068117645 hasConcept C538909803 @default.
• W2068117645 hasConcept C54355233 @default.
• W2068117645 hasConcept C55493867 @default.
• W2068117645 hasConcept C70721500 @default.
• W2068117645 hasConcept C86803240 @default.
• W2068117645 hasConceptScore W2068117645C104317684 @default.
• W2068117645 hasConceptScore W2068117645C141231307 @default.
• W2068117645 hasConceptScore W2068117645C157887575 @default.
• W2068117645 hasConceptScore W2068117645C181199279 @default.
• W2068117645 hasConceptScore W2068117645C2776087148 @default.
• W2068117645 hasConceptScore W2068117645C2776841403 @default.
• W2068117645 hasConceptScore W2068117645C2778760513 @default.
• W2068117645 hasConceptScore W2068117645C2779201268 @default.
• W2068117645 hasConceptScore W2068117645C4918238 @default.
• W2068117645 hasConceptScore W2068117645C538909803 @default.
• W2068117645 hasConceptScore W2068117645C54355233 @default.
• W2068117645 hasConceptScore W2068117645C55493867 @default.
• W2068117645 hasConceptScore W2068117645C70721500 @default.
• W2068117645 hasConceptScore W2068117645C86803240 @default.
• W2068117645 hasIssue "11" @default.
• W2068117645 hasLocation W20681176451 @default.
• W2068117645 hasLocation W20681176452 @default.
• W2068117645 hasLocation W20681176453 @default.
• W2068117645 hasOpenAccess W2068117645 @default.
• W2068117645 hasPrimaryLocation W20681176451 @default.
• W2068117645 hasRelatedWork W18801125 @default.
• W2068117645 hasRelatedWork W1996950251 @default.
• W2068117645 hasRelatedWork W2023289733 @default.
• W2068117645 hasRelatedWork W2078054120 @default.
• W2068117645 hasRelatedWork W2109048484 @default.

• next