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• W2068996722 abstract "The FM-index is a data structure which is seeing more and more pervasive use, in particular in the field of high-throughput bioinformatics. Algorithms based on it show a pseudo-random memory access pattern. As a consequence, they are usually bound by memory bandwidth rather than CPU usage. Naive GPU implementations are no exception. Here we show that the combination of a compact design of the FM-index and a thread-cooperative approach can be used to restore a proper balance. The resulting solution is less memory-bandwidth intensive, and allows full exploitation of the computational resources of the GPU across several GPU architectures." @default.
• W2068996722 created "2016-06-24" @default.
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• W2068996722 date "2014-08-01" @default.
• W2068996722 modified "2023-09-29" @default.
• W2068996722 title "FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint" @default.
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• W2068996722 doi "https://doi.org/10.1109/ispa.2014.10" @default.
• W2068996722 hasPublicationYear "2014" @default.
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