FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2069689025> ?p ?o ?g. }

• W2069689025 endingPage "e191" @default.
• W2069689025 startingPage "e191" @default.
• W2069689025 abstract "The advances of next-generation sequencing technology have facilitated metagenomics research that attempts to determine directly the whole collection of genetic material within an environmental sample (i.e. the metagenome). Identification of genes directly from short reads has become an important yet challenging problem in annotating metagenomes, since the assembly of metagenomes is often not available. Gene predictors developed for whole genomes (e.g. Glimmer) and recently developed for metagenomic sequences (e.g. MetaGene) show a significant decrease in performance as the sequencing error rates increase, or as reads get shorter. We have developed a novel gene prediction method FragGeneScan, which combines sequencing error models and codon usages in a hidden Markov model to improve the prediction of protein-coding region in short reads. The performance of FragGeneScan was comparable to Glimmer and MetaGene for complete genomes. But for short reads, FragGeneScan consistently outperformed MetaGene (accuracy improved ∼62% for reads of 400 bases with 1% sequencing errors, and ∼18% for short reads of 100 bases that are error free). When applied to metagenomes, FragGeneScan recovered substantially more genes than MetaGene predicted (>90% of the genes identified by homology search), and many novel genes with no homologs in current protein sequence database." @default.
• W2069689025 created "2016-06-24" @default.
• W2069689025 creator A5078007096 @default.
• W2069689025 creator A5078928762 @default.
• W2069689025 creator A5082620694 @default.
• W2069689025 date "2010-08-28" @default.
• W2069689025 modified "2023-10-18" @default.
• W2069689025 title "FragGeneScan: predicting genes in short and error-prone reads" @default.
• W2069689025 cites W1898463343 @default.
• W2069689025 cites W1984345785 @default.
• W2069689025 cites W1989348205 @default.
• W2069689025 cites W1994456450 @default.
• W2069689025 cites W2000119365 @default.
• W2069689025 cites W2004548026 @default.
• W2069689025 cites W2008430614 @default.
• W2069689025 cites W2031207772 @default.
• W2069689025 cites W2032870665 @default.
• W2069689025 cites W2033705779 @default.
• W2069689025 cites W2048673910 @default.
• W2069689025 cites W2048818637 @default.
• W2069689025 cites W2055043387 @default.
• W2069689025 cites W2055503200 @default.
• W2069689025 cites W2061943918 @default.
• W2069689025 cites W2079268915 @default.
• W2069689025 cites W2083788527 @default.
• W2069689025 cites W2099006507 @default.
• W2069689025 cites W2115026474 @default.
• W2069689025 cites W2118526609 @default.
• W2069689025 cites W2123016662 @default.
• W2069689025 cites W2125755185 @default.
• W2069689025 cites W2125838338 @default.
• W2069689025 cites W2127415562 @default.
• W2069689025 cites W2133253129 @default.
• W2069689025 cites W2136145671 @default.
• W2069689025 cites W2137839234 @default.
• W2069689025 cites W2140785063 @default.
• W2069689025 cites W2140960177 @default.
• W2069689025 cites W2144527215 @default.
• W2069689025 cites W2145336165 @default.
• W2069689025 cites W2147378425 @default.
• W2069689025 cites W2147783737 @default.
• W2069689025 cites W2149573313 @default.
• W2069689025 cites W2153276014 @default.
• W2069689025 cites W2154969423 @default.
• W2069689025 cites W2156434996 @default.
• W2069689025 cites W2156701707 @default.
• W2069689025 cites W2158253061 @default.
• W2069689025 cites W2159406441 @default.
• W2069689025 cites W2160053034 @default.
• W2069689025 cites W2162704968 @default.
• W2069689025 cites W2166064969 @default.
• W2069689025 cites W4248176371 @default.
• W2069689025 doi "https://doi.org/10.1093/nar/gkq747" @default.
• W2069689025 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/2978382" @default.
• W2069689025 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/20805240" @default.
• W2069689025 hasPublicationYear "2010" @default.
• W2069689025 type Work @default.
• W2069689025 sameAs 2069689025 @default.
• W2069689025 citedByCount "653" @default.
• W2069689025 countsByYear W20696890252012 @default.
• W2069689025 countsByYear W20696890252013 @default.
• W2069689025 countsByYear W20696890252014 @default.
• W2069689025 countsByYear W20696890252015 @default.
• W2069689025 countsByYear W20696890252016 @default.
• W2069689025 countsByYear W20696890252017 @default.
• W2069689025 countsByYear W20696890252018 @default.
• W2069689025 countsByYear W20696890252019 @default.
• W2069689025 countsByYear W20696890252020 @default.
• W2069689025 countsByYear W20696890252021 @default.
• W2069689025 countsByYear W20696890252022 @default.
• W2069689025 countsByYear W20696890252023 @default.
• W2069689025 crossrefType "journal-article" @default.
• W2069689025 hasAuthorship W2069689025A5078007096 @default.
• W2069689025 hasAuthorship W2069689025A5078928762 @default.
• W2069689025 hasAuthorship W2069689025A5082620694 @default.
• W2069689025 hasBestOaLocation W20696890251 @default.
• W2069689025 hasConcept C104317684 @default.
• W2069689025 hasConcept C105565629 @default.
• W2069689025 hasConcept C141231307 @default.
• W2069689025 hasConcept C15151743 @default.
• W2069689025 hasConcept C51679486 @default.
• W2069689025 hasConcept C54355233 @default.
• W2069689025 hasConcept C70721500 @default.
• W2069689025 hasConcept C86803240 @default.
• W2069689025 hasConceptScore W2069689025C104317684 @default.
• W2069689025 hasConceptScore W2069689025C105565629 @default.
• W2069689025 hasConceptScore W2069689025C141231307 @default.
• W2069689025 hasConceptScore W2069689025C15151743 @default.
• W2069689025 hasConceptScore W2069689025C51679486 @default.
• W2069689025 hasConceptScore W2069689025C54355233 @default.
• W2069689025 hasConceptScore W2069689025C70721500 @default.
• W2069689025 hasConceptScore W2069689025C86803240 @default.
• W2069689025 hasIssue "20" @default.
• W2069689025 hasLocation W20696890251 @default.
• W2069689025 hasLocation W20696890252 @default.
• W2069689025 hasLocation W20696890253 @default.
• W2069689025 hasLocation W20696890254 @default.
• W2069689025 hasOpenAccess W2069689025 @default.

• next