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• W2070360519 abstract "Two plant-specific transcription factors, NAC and YABBY, are involved in important plant developmental processes. However their molecular mechanisms, especially DNA binding sites and co-regulated genes, are largely unknown during soybean seedling development. In order to identify genome-wide binding sites of specific members of the NAC and YABBY transcription factors and co-regulated genes, we performed Chromatin Immunoprecipitation Sequencing (ChIP-Seq) and RNA Sequencing (RNA-Seq) using cotyledons from soybean seedling developmental stages. Our RNA-Seq data revealed that these particular NAC and YABBY transcription factors showed a clear pattern in their expression during soybean seedling development. The highest level of their expression was found in seedling developmental stage 4 when cotyledons undergo a physiological transition from non-photosynthetic storage tissue to a metabolically active photosynthetic tissue. Our ChIP-Seq data identified 72 genes potentially regulated by the NAC and 96 genes by the YABBY transcription factors examined. Our RNA-Seq data revealed highly differentially expressed candidate genes regulated by the NAC transcription factor include lipoxygense, pectin methyl esterase inhibitor, DEAD/DEAH box helicase and homeobox associated proteins. YABBY-regulated genes include AP2 transcription factor, fatty acid desaturase and WRKY transcription factor. Additionally, we have identified DNA binding motifs for the NAC and YABBY transcription factors. Genome-wide determination of binding sites for NAC and YABBY transcription factors and identification of candidate genes regulated by these transcription factors will advance the understanding of complex gene regulatory networks during soybean seedling development. Our data imply that there is transcriptional reprogramming during the functional transition of cotyledons from non-photosynthetic storage tissue to metabolically active photosynthetic tissue." @default.
• W2070360519 created "2016-06-24" @default.
• W2070360519 creator A5007935545 @default.
• W2070360519 creator A5026136557 @default.
• W2070360519 date "2013-01-01" @default.
• W2070360519 modified "2023-10-10" @default.
• W2070360519 title "Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq" @default.
• W2070360519 cites W1968475238 @default.
• W2070360519 cites W1981552494 @default.
• W2070360519 cites W1990357088 @default.
• W2070360519 cites W1994065211 @default.
• W2070360519 cites W1996690481 @default.
• W2070360519 cites W1998673778 @default.
• W2070360519 cites W2001554877 @default.
• W2070360519 cites W2006715801 @default.
• W2070360519 cites W2011617931 @default.
• W2070360519 cites W2012186108 @default.
• W2070360519 cites W2012986985 @default.
• W2070360519 cites W2013336813 @default.
• W2070360519 cites W2019882121 @default.
• W2070360519 cites W2021341670 @default.
• W2070360519 cites W2022372217 @default.
• W2070360519 cites W2025545161 @default.
• W2070360519 cites W2027613348 @default.
• W2070360519 cites W2031609604 @default.
• W2070360519 cites W2036263230 @default.
• W2070360519 cites W2041741132 @default.
• W2070360519 cites W2047179560 @default.
• W2070360519 cites W2050524113 @default.
• W2070360519 cites W2051558036 @default.
• W2070360519 cites W2058343401 @default.
• W2070360519 cites W2060247291 @default.
• W2070360519 cites W2065119990 @default.
• W2070360519 cites W2065513192 @default.
• W2070360519 cites W2065996794 @default.
• W2070360519 cites W2078336779 @default.
• W2070360519 cites W2082409547 @default.
• W2070360519 cites W2082980069 @default.
• W2070360519 cites W2084620487 @default.
• W2070360519 cites W2089338443 @default.
• W2070360519 cites W2092532907 @default.
• W2070360519 cites W2093146349 @default.
• W2070360519 cites W2097220641 @default.
• W2070360519 cites W2098456632 @default.
• W2070360519 cites W2104046482 @default.
• W2070360519 cites W2104865962 @default.
• W2070360519 cites W2107593640 @default.
• W2070360519 cites W2109745159 @default.
• W2070360519 cites W2114661018 @default.
• W2070360519 cites W2115395732 @default.
• W2070360519 cites W2117802964 @default.
• W2070360519 cites W2117840022 @default.
• W2070360519 cites W2118672460 @default.
• W2070360519 cites W2124342021 @default.
• W2070360519 cites W2124985265 @default.
• W2070360519 cites W2127076461 @default.
• W2070360519 cites W2129795133 @default.
• W2070360519 cites W2130163276 @default.
• W2070360519 cites W2130663480 @default.
• W2070360519 cites W2131493813 @default.
• W2070360519 cites W2135861471 @default.
• W2070360519 cites W2136124933 @default.
• W2070360519 cites W2140522117 @default.
• W2070360519 cites W2142008808 @default.
• W2070360519 cites W2145091349 @default.
• W2070360519 cites W2145656045 @default.
• W2070360519 cites W2152239989 @default.
• W2070360519 cites W2153286183 @default.
• W2070360519 cites W2154431984 @default.
• W2070360519 cites W2155704264 @default.
• W2070360519 cites W2156066129 @default.
• W2070360519 cites W2158860643 @default.
• W2070360519 cites W2159513571 @default.
• W2070360519 cites W2161391264 @default.
• W2070360519 cites W2167159991 @default.
• W2070360519 cites W2168370131 @default.
• W2070360519 cites W2170386697 @default.
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• W2070360519 doi "https://doi.org/10.1186/1471-2164-14-477" @default.
• W2070360519 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3720225" @default.
• W2070360519 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/23865409" @default.
• W2070360519 hasPublicationYear "2013" @default.
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