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- W2076257032 abstract "Amino acid networks (AANs) analysis is a new way to reveal the relationship between protein structure and function. We constructed six different types of AANs based on iron superoxide dismutase (Fe-SOD) three-dimensional structure information. These Fe-SOD AANs have clear community structures when they were modularized by different methods. Especially, detected communities are related to Fe-SOD secondary structures. Regular structures show better correlations with detected communities than irregular structures, and loops weaken these correlations, which suggest that secondary structure is the unit element in Fe-SOD folding process. In addition, a comparative analysis of mesophilic and thermophilic Fe-SOD AANs' communities revealed that thermostable Fe-SOD AANs had more highly associated community structures than mesophilic one. Thermophilic Fe-SOD AANs also had more high similarity between communities and secondary structures than mesophilic Fe-SOD AANs. The communities in Fe-SOD AANs show that dense interactions in modules can help to stabilize thermophilic Fe-SOD." @default.
- W2076257032 created "2016-06-24" @default.
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- W2076257032 date "2015-02-01" @default.
- W2076257032 modified "2023-09-25" @default.
- W2076257032 title "Communities in the iron superoxide dismutase amino acid network" @default.
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- W2076257032 doi "https://doi.org/10.1016/j.jtbi.2014.11.030" @default.
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