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- W2078960209 endingPage "479" @default.
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- W2078960209 abstract "Abstract Molecular dynamics (MD) simulations have been performed on the A6 containing DNA dodecamers d(GGCAAAAAACGG) solved by NMR and d(CGCAAAAAAGCG) solved by crystallography. The experimental structures differ in the direction of axis bending and in other small but important aspects relevant to the DNA curvature problem. Five nanosecond MD simulations of each sequence have been performed, beginning with both the NMR and crystal forms as well as canonical B‐form DNA. The results show that all simulations converge to a common form in close proximity to the observed NMR structure, indicating that the structure obtained in the crystal is likely a strained form due to packing effects. A‐tracts in the MD model are essentially straight. The origin of axis curvature is found at pyrimidine–purine steps in the flanking sequences. © 2004 Wiley Periodicals, Inc. Biopolymers, 2004" @default.
- W2078960209 created "2016-06-24" @default.
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- W2078960209 date "2004-11-03" @default.
- W2078960209 modified "2023-09-30" @default.
- W2078960209 title "Structure and axis curvature in two dA<sub>6</sub>·dT<sub>6</sub>DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy" @default.
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- W2078960209 doi "https://doi.org/10.1002/bip.20157" @default.
- W2078960209 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/15526331" @default.
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