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• W2087362844 endingPage "e27938" @default.
• W2087362844 startingPage "e27938" @default.
• W2087362844 abstract "Giant freshwater prawn (Macrobrachium rosenbergii or GFP), is the most economically important freshwater crustacean species. However, as little is known about its genome, 454 pyrosequencing of cDNA was undertaken to characterise its transcriptome and identify genes important for growth.A collection of 787,731 sequence reads (244.37 Mb) obtained from 454 pyrosequencing analysis of cDNA prepared from muscle, ovary and testis tissues taken from 18 adult prawns was assembled into 123,534 expressed sequence tags (ESTs). Of these, 46% of the 8,411 contigs and 19% of 115,123 singletons possessed high similarity to sequences in the GenBank non-redundant database, with most significant (E value < 1e(-5)) contig (80%) and singleton (84%) matches occurring with crustacean and insect sequences. KEGG analysis of the contig open reading frames identified putative members of several biological pathways potentially important for growth. The top InterProScan domains detected included RNA recognition motifs, serine/threonine-protein kinase-like domains, actin-like families, and zinc finger domains. Transcripts derived from genes such as actin, myosin heavy and light chain, tropomyosin and troponin with fundamental roles in muscle development and construction were abundant. Amongst the contigs, 834 single nucleotide polymorphisms, 1198 indels and 658 simple sequence repeats motifs were also identified.The M. rosenbergii transcriptome data reported here should provide an invaluable resource for improving our understanding of this species' genome structure and biology. The data will also instruct future functional studies to manipulate or select for genes influencing growth that should find practical applications in aquaculture breeding programs." @default.
• W2087362844 created "2016-06-24" @default.
• W2087362844 creator A5002761648 @default.
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• W2087362844 creator A5022744244 @default.
• W2087362844 creator A5035879861 @default.
• W2087362844 creator A5063522743 @default.
• W2087362844 date "2011-12-08" @default.
• W2087362844 modified "2023-10-11" @default.
• W2087362844 title "Transcriptomics of a Giant Freshwater Prawn (Macrobrachium rosenbergii): De Novo Assembly, Annotation and Marker Discovery" @default.
• W2087362844 cites W1515638484 @default.
• W2087362844 cites W1524206047 @default.
• W2087362844 cites W1533548496 @default.
• W2087362844 cites W1544954016 @default.
• W2087362844 cites W1548774217 @default.
• W2087362844 cites W1824346003 @default.
• W2087362844 cites W1845241435 @default.
• W2087362844 cites W1914947854 @default.
• W2087362844 cites W1932416811 @default.
• W2087362844 cites W1968338826 @default.
• W2087362844 cites W1969084293 @default.
• W2087362844 cites W1969255709 @default.
• W2087362844 cites W1974116356 @default.
• W2087362844 cites W1976102741 @default.
• W2087362844 cites W1977598234 @default.
• W2087362844 cites W1977759371 @default.
• W2087362844 cites W1980471868 @default.
• W2087362844 cites W1981148355 @default.
• W2087362844 cites W1985484001 @default.
• W2087362844 cites W1986184283 @default.
• W2087362844 cites W1988672761 @default.
• W2087362844 cites W1989773116 @default.
• W2087362844 cites W1992243233 @default.
• W2087362844 cites W1996476188 @default.
• W2087362844 cites W1998213145 @default.
• W2087362844 cites W2001676460 @default.
• W2087362844 cites W2004315009 @default.
• W2087362844 cites W2005189737 @default.
• W2087362844 cites W2005268657 @default.
• W2087362844 cites W2005811847 @default.
• W2087362844 cites W2006895229 @default.
• W2087362844 cites W2007092345 @default.
• W2087362844 cites W2007534254 @default.
• W2087362844 cites W2010018740 @default.
• W2087362844 cites W2011002295 @default.
• W2087362844 cites W2011991138 @default.
• W2087362844 cites W2012632550 @default.
• W2087362844 cites W2014367743 @default.
• W2087362844 cites W2016298524 @default.
• W2087362844 cites W2019087841 @default.
• W2087362844 cites W2022875163 @default.
• W2087362844 cites W2025732180 @default.
• W2087362844 cites W2026048294 @default.
• W2087362844 cites W2030096605 @default.
• W2087362844 cites W2031197130 @default.
• W2087362844 cites W2032184683 @default.
• W2087362844 cites W2033274666 @default.
• W2087362844 cites W2033574647 @default.
• W2087362844 cites W2036809388 @default.
• W2087362844 cites W2038216284 @default.
• W2087362844 cites W2042535043 @default.
• W2087362844 cites W2045037207 @default.
• W2087362844 cites W2047738921 @default.
• W2087362844 cites W2049917981 @default.
• W2087362844 cites W2050287345 @default.
• W2087362844 cites W2050864553 @default.
• W2087362844 cites W2052368967 @default.
• W2087362844 cites W2052781326 @default.
• W2087362844 cites W2053463144 @default.
• W2087362844 cites W2055004388 @default.
• W2087362844 cites W2056294577 @default.
• W2087362844 cites W2058510100 @default.
• W2087362844 cites W2058861830 @default.
• W2087362844 cites W2059296675 @default.
• W2087362844 cites W2059559956 @default.
• W2087362844 cites W2059966303 @default.
• W2087362844 cites W2062261826 @default.
• W2087362844 cites W2066198185 @default.
• W2087362844 cites W2066559502 @default.
• W2087362844 cites W2067594063 @default.
• W2087362844 cites W2068250945 @default.
• W2087362844 cites W2071392883 @default.
• W2087362844 cites W2077743844 @default.
• W2087362844 cites W2082164372 @default.
• W2087362844 cites W2084213850 @default.
• W2087362844 cites W2084806739 @default.
• W2087362844 cites W2084865500 @default.
• W2087362844 cites W2088244435 @default.
• W2087362844 cites W2089520184 @default.
• W2087362844 cites W2090521808 @default.
• W2087362844 cites W2092672870 @default.
• W2087362844 cites W2097186235 @default.
• W2087362844 cites W2099595833 @default.
• W2087362844 cites W2100902764 @default.
• W2087362844 cites W2101346721 @default.
• W2087362844 cites W2103017472 @default.
• W2087362844 cites W2107271212 @default.

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