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- W2088792575 abstract "In genomic sequence analysis, approximate searching is necessary to tolerate errors involved from genetic or mechanic reasons. Short-read mapping method is one of the methods that can search genomic objects allowing an acceptable level of error rates. In this model, a large set of fragments is given, and it is asked to find the similar regions on a long sequence, where the fragments are matched as many as possible. In this paper, we exploit this model to search textual objects treating them in a genomic view. And we also propose a new method for fragment ordering that considers a time limit in the search process. The proposed method tends to select fragments having less frequency, which allows the maximum number of distinct fragments to be processed within a short time period. Empirical tests showed that our method is much faster than the previous method." @default.
- W2088792575 created "2016-06-24" @default.
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- W2088792575 date "2015-01-08" @default.
- W2088792575 modified "2023-09-24" @default.
- W2088792575 title "A new approach for approximate text search using genomic short-read mapping model" @default.
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- W2088792575 doi "https://doi.org/10.1145/2701126.2701151" @default.
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