FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2096128575> ?p ?o ?g. }

• W2096128575 endingPage "770" @default.
• W2096128575 startingPage "764" @default.
• W2096128575 abstract "Counting the number of occurrences of every k-mer (substring of length k) in a long string is a central subproblem in many applications, including genome assembly, error correction of sequencing reads, fast multiple sequence alignment and repeat detection. Recently, the deep sequence coverage generated by next-generation sequencing technologies has caused the amount of sequence to be processed during a genome project to grow rapidly, and has rendered current k-mer counting tools too slow and memory intensive. At the same time, large multicore computers have become commonplace in research facilities allowing for a new parallel computational paradigm.We propose a new k-mer counting algorithm and associated implementation, called Jellyfish, which is fast and memory efficient. It is based on a multithreaded, lock-free hash table optimized for counting k-mers up to 31 bases in length. Due to their flexibility, suffix arrays have been the data structure of choice for solving many string problems. For the task of k-mer counting, important in many biological applications, Jellyfish offers a much faster and more memory-efficient solution.The Jellyfish software is written in C++ and is GPL licensed. It is available for download at http://www.cbcb.umd.edu/software/jellyfish." @default.
• W2096128575 created "2016-06-24" @default.
• W2096128575 creator A5009407234 @default.
• W2096128575 creator A5058132020 @default.
• W2096128575 date "2011-01-07" @default.
• W2096128575 modified "2023-10-18" @default.
• W2096128575 title "A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i>-mers" @default.
• W2096128575 cites W1606270358 @default.
• W2096128575 cites W1635391495 @default.
• W2096128575 cites W1981393723 @default.
• W2096128575 cites W1992950355 @default.
• W2096128575 cites W2009425918 @default.
• W2096128575 cites W2037444377 @default.
• W2096128575 cites W2084802221 @default.
• W2096128575 cites W2096634299 @default.
• W2096128575 cites W2105459732 @default.
• W2096128575 cites W2127465481 @default.
• W2096128575 cites W2132926880 @default.
• W2096128575 cites W2133767259 @default.
• W2096128575 cites W2133956160 @default.
• W2096128575 cites W2152073175 @default.
• W2096128575 cites W2158682869 @default.
• W2096128575 cites W2159392969 @default.
• W2096128575 cites W2159946869 @default.
• W2096128575 cites W2173213060 @default.
• W2096128575 doi "https://doi.org/10.1093/bioinformatics/btr011" @default.
• W2096128575 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/3051319" @default.
• W2096128575 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/21217122" @default.
• W2096128575 hasPublicationYear "2011" @default.
• W2096128575 type Work @default.
• W2096128575 sameAs 2096128575 @default.
• W2096128575 citedByCount "2739" @default.
• W2096128575 countsByYear W20961285752012 @default.
• W2096128575 countsByYear W20961285752013 @default.
• W2096128575 countsByYear W20961285752014 @default.
• W2096128575 countsByYear W20961285752015 @default.
• W2096128575 countsByYear W20961285752016 @default.
• W2096128575 countsByYear W20961285752017 @default.
• W2096128575 countsByYear W20961285752018 @default.
• W2096128575 countsByYear W20961285752019 @default.
• W2096128575 countsByYear W20961285752020 @default.
• W2096128575 countsByYear W20961285752021 @default.
• W2096128575 countsByYear W20961285752022 @default.
• W2096128575 countsByYear W20961285752023 @default.
• W2096128575 crossrefType "journal-article" @default.
• W2096128575 hasAuthorship W2096128575A5009407234 @default.
• W2096128575 hasAuthorship W2096128575A5058132020 @default.
• W2096128575 hasBestOaLocation W20961285752 @default.
• W2096128575 hasConcept C104317684 @default.
• W2096128575 hasConcept C11413529 @default.
• W2096128575 hasConcept C127413603 @default.
• W2096128575 hasConcept C141231307 @default.
• W2096128575 hasConcept C147224247 @default.
• W2096128575 hasConcept C150194340 @default.
• W2096128575 hasConcept C157486923 @default.
• W2096128575 hasConcept C162317418 @default.
• W2096128575 hasConcept C162319229 @default.
• W2096128575 hasConcept C173608175 @default.
• W2096128575 hasConcept C174839445 @default.
• W2096128575 hasConcept C182407805 @default.
• W2096128575 hasConcept C18949551 @default.
• W2096128575 hasConcept C199360897 @default.
• W2096128575 hasConcept C2279292 @default.
• W2096128575 hasConcept C2777904410 @default.
• W2096128575 hasConcept C2778112365 @default.
• W2096128575 hasConcept C2779259728 @default.
• W2096128575 hasConcept C33923547 @default.
• W2096128575 hasConcept C37914503 @default.
• W2096128575 hasConcept C41008148 @default.
• W2096128575 hasConcept C54355233 @default.
• W2096128575 hasConcept C55493867 @default.
• W2096128575 hasConcept C67388219 @default.
• W2096128575 hasConcept C78519656 @default.
• W2096128575 hasConcept C78766204 @default.
• W2096128575 hasConcept C80444323 @default.
• W2096128575 hasConcept C86803240 @default.
• W2096128575 hasConcept C99138194 @default.
• W2096128575 hasConceptScore W2096128575C104317684 @default.
• W2096128575 hasConceptScore W2096128575C11413529 @default.
• W2096128575 hasConceptScore W2096128575C127413603 @default.
• W2096128575 hasConceptScore W2096128575C141231307 @default.
• W2096128575 hasConceptScore W2096128575C147224247 @default.
• W2096128575 hasConceptScore W2096128575C150194340 @default.
• W2096128575 hasConceptScore W2096128575C157486923 @default.
• W2096128575 hasConceptScore W2096128575C162317418 @default.
• W2096128575 hasConceptScore W2096128575C162319229 @default.
• W2096128575 hasConceptScore W2096128575C173608175 @default.
• W2096128575 hasConceptScore W2096128575C174839445 @default.
• W2096128575 hasConceptScore W2096128575C182407805 @default.
• W2096128575 hasConceptScore W2096128575C18949551 @default.
• W2096128575 hasConceptScore W2096128575C199360897 @default.
• W2096128575 hasConceptScore W2096128575C2279292 @default.
• W2096128575 hasConceptScore W2096128575C2777904410 @default.
• W2096128575 hasConceptScore W2096128575C2778112365 @default.
• W2096128575 hasConceptScore W2096128575C2779259728 @default.
• W2096128575 hasConceptScore W2096128575C33923547 @default.
• W2096128575 hasConceptScore W2096128575C37914503 @default.
• W2096128575 hasConceptScore W2096128575C41008148 @default.

• next