FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W2097532103> ?p ?o ?g. }

• W2097532103 endingPage "909" @default.
• W2097532103 startingPage "899" @default.
• W2097532103 abstract "Simple sequence repeats (SSRs) or microsatellites are a common component of genomes but vary greatly across species in their abundance. We tested the hypothesis that this variation is due in part to AT/GC content of genomes, with genomes biased toward either high AT or high CG generating more short random repeats that are long enough to enhance expansion through slippage during replication. To test this hypothesis, we identified repeats with perfect tandem iterations of 1-6 bp from 25 protists with complete or near-complete genome sequences. As expected, the density and the frequency are highly related to genome AT content, with excellent fits to quadratic regressions with minima near a 50% AT content and rising toward both extremes. Within species, the same trends hold, except the limited variation in AT content within each species places each mainly on the descending (GC rich), middle, or ascending (AT rich) part of the curve. The base usages of repeat motifs are also significantly correlated with genome nucleotide compositions: Percentages of AT-rich motifs rise with the increase of genome AT content but vice versa for GC-rich subgroups. Amino acid homopolymer repeats also show the expected quadratic relationship, with higher abundance in species with AT content biased in either direction. Our results show that genome nucleotide composition explains up to half of the variance in the abundance and motif constitution of SSRs." @default.
• W2097532103 created "2016-06-24" @default.
• W2097532103 creator A5012967730 @default.
• W2097532103 creator A5015968014 @default.
• W2097532103 creator A5039698117 @default.
• W2097532103 date "2010-10-13" @default.
• W2097532103 modified "2023-10-15" @default.
• W2097532103 title "Genome Nucleotide Composition Shapes Variation in Simple Sequence Repeats" @default.
• W2097532103 cites W1557430844 @default.
• W2097532103 cites W1566195538 @default.
• W2097532103 cites W1963617394 @default.
• W2097532103 cites W1972097354 @default.
• W2097532103 cites W1975644140 @default.
• W2097532103 cites W1984048247 @default.
• W2097532103 cites W1985118587 @default.
• W2097532103 cites W1985364431 @default.
• W2097532103 cites W1985968682 @default.
• W2097532103 cites W1986010950 @default.
• W2097532103 cites W1993808334 @default.
• W2097532103 cites W1997162544 @default.
• W2097532103 cites W1997352668 @default.
• W2097532103 cites W2006025260 @default.
• W2097532103 cites W2009527388 @default.
• W2097532103 cites W2009903504 @default.
• W2097532103 cites W2015162225 @default.
• W2097532103 cites W2021326398 @default.
• W2097532103 cites W2022748995 @default.
• W2097532103 cites W2028464019 @default.
• W2097532103 cites W2032816020 @default.
• W2097532103 cites W2034591381 @default.
• W2097532103 cites W2040438092 @default.
• W2097532103 cites W2041088371 @default.
• W2097532103 cites W2046391155 @default.
• W2097532103 cites W2047531378 @default.
• W2097532103 cites W2063687233 @default.
• W2097532103 cites W2065664697 @default.
• W2097532103 cites W2069003894 @default.
• W2097532103 cites W2090139400 @default.
• W2097532103 cites W2090385974 @default.
• W2097532103 cites W2091077157 @default.
• W2097532103 cites W2092006462 @default.
• W2097532103 cites W2097095628 @default.
• W2097532103 cites W2101780901 @default.
• W2097532103 cites W2108267719 @default.
• W2097532103 cites W2110899053 @default.
• W2097532103 cites W2119436849 @default.
• W2097532103 cites W2130553467 @default.
• W2097532103 cites W2136749822 @default.
• W2097532103 cites W2140211206 @default.
• W2097532103 cites W2141402301 @default.
• W2097532103 cites W2143498579 @default.
• W2097532103 cites W2145868564 @default.
• W2097532103 cites W2149191067 @default.
• W2097532103 cites W2151409320 @default.
• W2097532103 cites W2151464048 @default.
• W2097532103 cites W2152512662 @default.
• W2097532103 cites W2152758563 @default.
• W2097532103 cites W2153217893 @default.
• W2097532103 cites W2157770995 @default.
• W2097532103 cites W2158148243 @default.
• W2097532103 cites W2162727935 @default.
• W2097532103 cites W2168909179 @default.
• W2097532103 cites W2171787842 @default.
• W2097532103 cites W4242077561 @default.
• W2097532103 doi "https://doi.org/10.1093/molbev/msq266" @default.
• W2097532103 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/20943830" @default.
• W2097532103 hasPublicationYear "2010" @default.
• W2097532103 type Work @default.
• W2097532103 sameAs 2097532103 @default.
• W2097532103 citedByCount "36" @default.
• W2097532103 countsByYear W20975321032012 @default.
• W2097532103 countsByYear W20975321032013 @default.
• W2097532103 countsByYear W20975321032014 @default.
• W2097532103 countsByYear W20975321032015 @default.
• W2097532103 countsByYear W20975321032016 @default.
• W2097532103 countsByYear W20975321032017 @default.
• W2097532103 countsByYear W20975321032018 @default.
• W2097532103 countsByYear W20975321032019 @default.
• W2097532103 countsByYear W20975321032020 @default.
• W2097532103 countsByYear W20975321032021 @default.
• W2097532103 countsByYear W20975321032022 @default.
• W2097532103 crossrefType "journal-article" @default.
• W2097532103 hasAuthorship W2097532103A5012967730 @default.
• W2097532103 hasAuthorship W2097532103A5015968014 @default.
• W2097532103 hasAuthorship W2097532103A5039698117 @default.
• W2097532103 hasBestOaLocation W20975321031 @default.
• W2097532103 hasConcept C104317684 @default.
• W2097532103 hasConcept C117751501 @default.
• W2097532103 hasConcept C141231307 @default.
• W2097532103 hasConcept C174600577 @default.
• W2097532103 hasConcept C180754005 @default.
• W2097532103 hasConcept C197077220 @default.
• W2097532103 hasConcept C27149982 @default.
• W2097532103 hasConcept C42251679 @default.
• W2097532103 hasConcept C54355233 @default.
• W2097532103 hasConcept C61271108 @default.
• W2097532103 hasConcept C61320498 @default.
• W2097532103 hasConcept C78458016 @default.

• next